BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923761
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52380.1 | Symbols: | NUP50 (Nucleoporin 50 kDa) protein | ... 2194 0.0
AT3G15970.1 | Symbols: | NUP50 (Nucleoporin 50 kDa) protein | ... 409 4e-113
> AT1G52380.1 | Symbols: | NUP50 (Nucleoporin 50 kDa) protein
| chr1:19508983-19511539 FORWARD LENGTH=1725
Length=1725
Score = 2194 bits (1188), Expect = 0.0
Identities = 1304/1362 (96%), Gaps = 0/1362 (0%)
Strand=Plus/Plus
Query 1 ATTCTCTCAAAACATTTCTAATGGGGGACTCGGAAAACGTTCAGCAACCTTCAAAAAAGA 60
||||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 145 ATTCTCTCATAACAATTCAAATGGGTGACTCGGAAAACGTTCAGCAACCTTCAAAAAAGA 204
Query 61 GAGGTGCCTTGAAGCAGCTGTCTCGTGACAATCCAGGTCTTGATGATGATGATGATTCAG 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 205 GAGGTGCCTTGAAGCAGCTGTCTCGTGATAATCCAGGTCTTGATGATGATGATGATTCAG 264
Query 121 CTGAACTTGCGAGTGGAACTTTCAAGAAGGCCAGTGATGAGGTATTGGCTAGTAGAAGAA 180
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 265 CTGAACTTGAGAGTGGAACTTTCAAGAAGGCCAGTGATGAGGTTTTGGCTAGTAGAAGAA 324
Query 181 TTTTCAGAGTTAAGCGCAAAGAGCCATCAACTGCGCCCGCTGCGGCACCCAATCCATTTG 240
|| ||||||||||||||||||||||||| |||| || | ||| ||| ||||||||||||
Sbjct 325 TTGTCAGAGTTAAGCGCAAAGAGCCATCTGCTGCTCCAGTTGCAGCATCCAATCCATTTG 384
Query 241 CTGGAATTCAGTTGGTCCCTACTTCTGCACCTGCTTCAACCCCTGTGGGAACAAATGCAC 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 385 CTGGAATTCAGTTGGTCCCTACGACTGCACCTGCTTCAACCCCTGTGGGAACAAATGCAC 444
Query 301 CTCTGCCTGAGTCAAAATTGGCTCCAGCTGAAGCAGTAGTTGAGGACAATCAAAAAGCAA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTCTGGCTGAGTCAAAATTGGCTCCAGCTGAAGCAGTAGTTGAGGACAATCAAAAAGCAA 504
Query 361 GTGATATTGAGGAGGGCGATGAAGTTGACAGTAAGAAGGTTGATGTCAAAGATCCTGCTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 505 GTGATATTGAGGAGGGCGATGAAGTTGACAGTAAGAAGGTTGATGTCAAAGATGCTGTTG 564
Query 421 GGGAAGAGACTGAAAAGACTAAAGATGAGGATGATAATCATTGTGGAAAGAGTGCTGATG 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 565 GGGAAGAGACTGAAAAGACTAAAGATAAGGATGATAATCATTGTGGAAAGAGTGCTGATG 624
Query 481 ACCAAGTTGCTGCTGCGGAAGTAGCTCAGACGGTCTCATGTGATACAAACGTTAACAACA 540
||||||||| ||| | ||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 625 TCCAAGTTGCGGCTACAGAAGTAGCTCAGATGGTCTCATGTGACACAAACGTTTGCAACA 684
Query 541 ACGCTGTTGAAGGAACAGACCAAACTGAGGTTCCTCTTGAGAAGAATTCAGGAGGTGATC 600
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 685 ACGCTGTTGAAGGAACAGACCAAACTGATTTTCCTCTTGAGAAGGATTCAGGAGGTGATC 744
Query 601 AGGCTGAGAAAAACGAAAAAGAAGGCAACGGAATTGAAGAAGCAGATAAGAACGGCGATA 660
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 745 AGGCTGAGAAAAAAGAAAAAGAAGGCAACGGAATTGAGGAAGCAGATAAGAATGGCGATA 804
Query 661 ATGGTGCTTTCAGTTCATTCCAACAGCATTCAAGTAACAAAAACGCATTCACCGGACTTG 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 ATGGTGCTTTCAGCTCATTCCAACAGCATTCAAGTAACAAAAACGCATTCACCGGACTTG 864
Query 721 CCAGTACAGAGGCTTCTGGGTCTTCGTTCTCATTTGGTTTGGTCTCTCAGGATGGTTCAA 780
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 865 CCAGTACAGAGGCTTCAGGGTCTTCGTTCTCATTTGGTTTGGTTTCTCAGGATGGTTCAA 924
Query 781 CTGGTACCGGGTCTCTCTTTGGATTTGGCCTTCCAAGCAGCAATAACTCTTCTCTATTCG 840
||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct 925 CTGGTACTGGGTCTCTCTTTGGCTTTGGCCTTCCAAGCAGCAATAGCTCTTCTATATTCG 984
Query 841 GTGCAACTGGATCTTCCATTATCAAGAAGACTGAGGGTAGTGGGTTTCCGCCAAAGCAAG 900
||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 985 GTGCAACTGGATCGTCCATTATCAAGAAGAGTGAAGGTAGTGGGTTTCCGCCAAAGCAAG 1044
Query 901 AGGTTTCCACAGAAACAGGTGAAGAGAATGAGAAAGTTGCCTTCTCAGCTGACTCGATTA 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1045 AGGTTTCCACAGAAACAGGTGAAGAGAATGAGAAAGTTGCCTTCTCAGCTGACTCGATCA 1104
Query 961 TGTTCGAATATCTTGATGGAGGATGGAAAGAGCGTGGGAAAGGAGAACTCAAGGTAAACG 1020
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1105 TGTTCGAATATCTTGATGGAGGATGGAAAGAGCGTGGAAAAGGAGAACTCAAGGTAAACG 1164
Query 1021 TCTCCAGTAATGGTGGTAAAGCAAGATTAGTTATGAGAGCTAAAGGAAACTACAGATTGA 1080
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TCTCCAGTAATGATGGTAAAGCAAGATTAGTTATGAGAGCTAAAGGAAACTACAGATTGA 1224
Query 1081 TCTTAAACGCGAGTCTTTACCCAGAAATGAAACTTGCAGCCATGGATAAAAAAGGAATCA 1140
||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 1225 TCTTAAACGCGAGTCTTTACCCAGAGATGAAACTTGCAAACATGGATAAAAAGGGAATCA 1284
Query 1141 CATTCGCTTGTGTGAATAGTGTAAGTGAAGGCAAAGAAGGTCTCTCTACATTTGCACTGA 1200
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1285 CATTCGCTTGTGTGAATAGTGTAAGCGAAGGCAAAGAAGGTCTCTCTACATTTGCACTGA 1344
Query 1201 AGTTCAAAGACCCGACAATCGTGGAAGAGTTTCGTGTAGCCATTGACAAACACAAAGACA 1260
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1345 AGTTCAAAGACCCGACAATTGTTGAAGAGTTTCGTGTAGCCATTGACAAACACAAAGATA 1404
Query 1261 GTAAACCAATGGAGAAAGCAGCAGAAGAATCAGCTCTCCCTCTGAAGACACCTGAGAACT 1320
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1405 GTAAACCAATGGAGAAAGCAGCAGAAAAATCAGCTCTTCCTCTGAAGACACCTGAGAACT 1464
Query 1321 CTCCAACAGCTACAGATACTTGAAGAAAAGGTAAAAAGAAAA 1362
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 CTCCAACAGCTACAGATACTTGAAGAAAAGGTAAAAAGAAAA 1506
> AT3G15970.1 | Symbols: | NUP50 (Nucleoporin 50 kDa) protein
| chr3:5408797-5411143 REVERSE LENGTH=1738
Length=1738
Score = 409 bits (221), Expect = 4e-113
Identities = 617/800 (77%), Gaps = 60/800 (8%)
Strand=Plus/Plus
Query 582 AAGAATTCAGGAGGTGATCAGGCTGAGAAA-AACGAAAAAGAAGGCAACGGAATTGAAGA 640
||| || |||| ||| ||||| |||||||| || | |||||| ||| | |||| ||||||
Sbjct 780 AAGGATACAGGTGGTAATCAGACTGAGAAAGAA-GGAAAAGAGGGCGATGGAAATGAAGA 838
Query 641 -AGCAGATAAGAACGGCGATAATGGTGCTTTCAGTTCATTCCAACAGCATTCAAGTAACA 699
| |||| || || || |||| ||| || || || || ||||| ||||| ||||||| ||
Sbjct 839 CA-CAGAGAAAAATGGAGATAGTGGAGCCTTGAGCTCCTTCCACCAGCACTCAAGTAGCA 897
Query 700 AAAACGCATTCACCGGACTTGCCAGTACAGAGGCT-TCTGGGTCTTCGTTCTCATTTGGT 758
||||||||||||| |||||||| || |||| || | |||| ||||||||||| || |||
Sbjct 898 AAAACGCATTCACAGGACTTGCTAGCACAG-GGTTCTCTGCTTCTTCGTTCTCGTTCGGT 956
Query 759 TTGG-TCTCTCAGGATGGTTCAACT-GGTACCGGGTCT---C--TC-T--TT-GGATTTG 807
|||| || | || || ||||| ||| ||| | || ||| | || | || | ||||
Sbjct 957 TTGGTTC-CACAAGAAGGTTCGACTGGGT-CTGGTTCTGAACAGTCATCCTTCAGTTTTG 1014
Query 808 GCCTTCCAAGC-AGCAAT---AACTCTTCTCTATTCGGTGCA-AC-TGGAT-CTTCCATT 860
| |||||| | |||| |||||||| || || |||||| | | | | ||||||||
Sbjct 1015 G----CCAAGCAAACAATGGAAACTCTTCCCTGTTTGGTGCATCCGTTGCTACTTCCATT 1070
Query 861 ATCAAG-A-AG-ACTG--A-GGGTAGTGGGTTTCCGCCAAAGCAAGAGGTTTCCA-CAGA 913
| || | | || || | | || || || || |||||||||| |||| || ||
Sbjct 1071 ACCACGAAGAGCACGGAAACTACTACTGCCTTCCCATCAAAGCAAGATGTTT-CAGTGGA 1129
Query 914 AACAGGTGAAGAGAATGAGAAAGTTGCCTTCTCAGCTGACTCGA-TTATGTTCGAATATC 972
|||||| |||||||| || |||| |||||| |||||||||| | | |||||||||||||
Sbjct 1130 AACAGGAGAAGAGAACGAAAAAGCAGCCTTCACAGCTGACTC-AGTAATGTTCGAATATC 1188
Query 973 TTGATGGAGGATGGAAAGAGCGTGGGAAAGGAGAACTCAAGGTAAACGTCTCCA-G--T- 1028
|||| |||||||||||||||||||||||||||||||||||||| || | || | | |
Sbjct 1189 TTGAGGGAGGATGGAAAGAGCGTGGGAAAGGAGAACTCAAGGTGAATATATCAACGACTG 1248
Query 1029 AATGGTGGTAAAGCAAGATTAGTTATGAGAGCTAAAGGAAACTACAGATTGATCTTAAAC 1088
|| | ||||| || ||||| |||||| | |||||||||||||| |||| |||||||
Sbjct 1249 AAAACAGA-AAAGCCAGGTTAGTAATGAGATCAAAAGGAAACTACAGGTTGACCTTAAAC 1307
Query 1089 GCGAGTCTTTACCCAGAAATGAAACTTGC-AGCCATGGATAAAAAAGGAATCACATTCGC 1147
|| ||||||||||| ||||||||||| || | ||||| || |||||||||||||| ||
Sbjct 1308 GCAAGTCTTTACCCGGAAATGAAACTGGCTAAA-ATGGACAAGAAAGGAATCACATTTGC 1366
Query 1148 TTGTGTGAATAGTGTAAGTGAAGGCAAAGAAGGTCTCTCTACATTTGCACTGAAGTTCAA 1207
||||||||||||||||||||| | ||| || |||||||||||||| ||||||||||||||
Sbjct 1367 TTGTGTGAATAGTGTAAGTGACGCCAAGGATGGTCTCTCTACATTGGCACTGAAGTTCAA 1426
Query 1208 AGACCCGACAATCGTGGAAGAGTTTCGTGTAGCCATTGACA-AACACAAAGACAGTAAAC 1266
||||| ||| | ||||||||||| || | || || || | |||| |||||||||||||
Sbjct 1427 GGACCCAACAGTGGTGGAAGAGTTCCGAGCAGTTATCGA-AGAACATAAAGACAGTAAAC 1485
Query 1267 CAATGGAGAAAGCAGCAGAAGAATCAGCTCTCCCTCTGAAGACACCTGAGAACTCTCCAA 1326
| | | |||| || || |||||| | | ||||||||||||||||||| || |
Sbjct 1486 CT-TCC-GTT-GCAGAAGCAG---CAGCTC-CT-T-TGAAGACACCTGAGAACTCACCGA 1536
Query 1327 CAGCT-ACAGATACTTGAAG 1345
||| | |||| |||||||
Sbjct 1537 GTGCTGA-AGATGCTTGAAG 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5