BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923763

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52400.1 | Symbols: BGL1, BGLU18, ATBG1 | beta glucosidase 1...   167    8e-41


> AT1G52400.1 | Symbols: BGL1, BGLU18, ATBG1 | beta glucosidase 
18 | chr1:19515151-19518160 FORWARD LENGTH=1916
Length=1916

 Score =  167 bits (90),  Expect = 8e-41
 Identities = 154/184 (84%), Gaps = 7/184 (4%)
 Strand=Plus/Plus

Query  1    GGTGTTTAGTCGTGCTGGTTATGAC-ACTAGaaaaaaaaaCTCCCGGACGTTGTTCACCG  59
            ||||||||||||||| ||||| ||| ||  | ||| ||| |||| ||||||||||| |||
Sbjct  726  GGTGTTTAGTCGTGCCGGTTACGACAAC--GGAAAGAAAGCTCCGGGACGTTGTTCGCCG  783

Query  60   TACAT--AAGAGTATATGGACCTCAATGTCAAGATGGACGGTCTGGATACGAAGCTTATC  117
            |||||    | || |||||||  || ||||| ||||| ||||||||||||||||||||||
Sbjct  784  TACATCCCCG-GT-TATGGACAGCATTGTCAGGATGGGCGGTCTGGATACGAAGCTTATC  841

Query  118  AAGTCAGTCACAACTTACTCTTGGCTCATGCTGAAGCCGTTGATGCGTTCAGAAAATACA  177
            ||||||||||||||||||||||| | |||||| | || ||||| || |||||||| | ||
Sbjct  842  AAGTCAGTCACAACTTACTCTTGTCGCATGCTTACGCTGTTGACGCATTCAGAAACTGCA  901

Query  178  AACA  181
            ||||
Sbjct  902  AACA  905



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5