BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923770
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 481 1e-134
> AT1G52490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like
(InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187),
F-box associated interaction domain (InterPro:IPR017451);
BEST Arabidopsis thaliana protein match is:
F-box and associated interaction domains-containing protein
(TAIR:AT1G32420.1); Has 1577 Blast hits to 1056 proteins
in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 1577; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:19556218-19559011 REVERSE LENGTH=1542
Length=1542
Score = 481 bits (260), Expect = 1e-134
Identities = 344/385 (89%), Gaps = 4/385 (1%)
Strand=Plus/Plus
Query 583 GATTGTCAACAATGGAGGACAATCCGAGGCAATATTGATGAGGAACTCATTCCAAACGGC 642
||||||| |||||||| | ||||||||||||||||||| | ||||||||| || | ||
Sbjct 403 GATTGTCCTCAATGGAGAAAAATCCGAGGCAATATTGATTACGAACTCATTTCAGTCAGC 462
Query 643 CAAGCGGGGGTATGCATTGACGGAACTATTTATTACGTAGCAGTTAGAAGAAAAGA-AAT 701
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 463 CGGGCGGGGGTATGCATTGACGGAACTATTTACTACGTAGCAGTTAGAAGAAAAGATAAT 522
Query 702 GTTCAAATATGGTGAAAC-TATAATGCTGAGTTTTGACGTGAGGTCGGAAATATTTTATC 760
| || ||||||| ||| | | ||| ||||||| ||||| | |||||||| ||||||||
Sbjct 523 G-AGAATTATGGTG-AACTTTTCATGATGAGTTTCGACGTAAAGTCGGAAAGATTTTATC 580
Query 761 ATGTCCGCACTCCTGAAGCATTGTGGAGTCCCAAGTGGAATGATCGAGCTCTTTTCAACC 820
||||||||||||||||| ||||||||||||||||||| | ||| |||| |||||| ||||
Sbjct 581 ATGTCCGCACTCCTGAAACATTGTGGAGTCCCAAGTGTACTGAGCGAGGTCTTTTTAACC 640
Query 821 ACCAAGGGAAGCTAGGATGCATAAGTAATAACGAAAACAATACAAGTGTGTGGATTATGG 880
||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct 641 ACCAAGGGAAGTTAGGATGCATAAGTAGCAACGAAAACAATATAAGTATGTGGATTATGG 700
Query 881 AGAATGCTGAGAAACAAGAATGGTCCAACATTACTTTTGACTTGCTTGAATACCCTGGAG 940
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 701 AGAATGCTGAGAAGCAAGAATGGTCCAACATTACTTTTGGCTTGCTTGAATACCCTGGAG 760
Query 941 GTGATTTCAGAACTTTCTCAGTTAT 965
||||||||||||||||||||| |||
Sbjct 761 GTGATTTCAGAACTTTCTCAGGTAT 785
Score = 457 bits (247), Expect = 2e-127
Identities = 304/329 (92%), Gaps = 14/329 (4%)
Strand=Plus/Plus
Query 1004 gaaggagaaaaacagaggtcatgagaaaaggaaatgaagaaaagaattaccgtgaagaag 1063
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 GAA-GAGAAAAACAGAGGTCATGAGAAAAGGAAATGAAGAGAAGAATTACCGTGAAGAAG 946
Query 1064 aaTATTTGCAACTTCCTCTGGATCTCATTGTGGAGATACTAAAGAAACTCCCGGGAAAGT 1123
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 947 AATATTTGCAACTCCCTCTGGATCTCATTGTGGAGATACTAAAGAAACTCCCGTTAAAGT 1006
Query 1124 CACTTGTGATCGGTTCCGATGCGTCTCAAAGCAATTGTCAACGATTATCTGCAGC-TGAA 1182
||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1007 CACTTGTGA--GGTTCCGATGCGTCTCAAAGCAATTTTCAACGATTATCTGCAGCCT-AA 1063
Query 1183 GAGGAAGAGACCATCGAGTCGGTCGTTACTCGATC-TTTAGCTCAGCCGGGGCAGCAGCT 1241
||| | | ||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 1064 GAG-ACTT--C-ATCGAGTCGGTGGTTACTCGA-CATTTAGCTCAGCCGGGGCAGCAGCT 1118
Query 1242 TCCCCTGTTGG---TCTTCCACCATTGTGTGCCTGAAACTTTCTTCACTGTCTCGTCTAG 1298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TCCCCTGTTGGCGGTCTTCCACCATTGTGTGCCTGAAACTTTCTTCACTGTCTCGTCTAG 1178
Query 1299 TTTCTCTCAAAGCCTCAAACCCGCAGTAT 1327
|||||| |||||||||||||||||| |||
Sbjct 1179 TTTCTCCCAAAGCCTCAAACCCGCAATAT 1207
Score = 364 bits (197), Expect = 2e-99
Identities = 250/275 (91%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 310 ATGTCTCGGTCTTTGAGACAGCCGCCTCATAAGCTTCCGGTCTTCATCTTCCACCGGTGT 369
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTCGGTCTTTGAGACAGCCGCCTCATAAGCTTCCGGTCTTCATCTTCCACCAATGT 60
Query 370 GCGCCTGAAACTTCCTTCACCGTGTCGTCTACATTCTCTCTAAGCACAAAACCCAAAGTA 429
| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GATCCTGGAACTTTCTTCACCGTGTCGTCTACATTCTCTCAAAGCACAAAACCCAAAGTA 120
Query 430 TCAATAATGCCTGGACCAAACAACTATTATTCGTTCAGGTATCAATACATCCAAGGCTTT 489
|||||||||||||||| |||| ||||| || ||||||||||||||||| | | |||||||
Sbjct 121 TCAATAATGCCTGGACGAAACCACTATAATGCGTTCAGGTATCAATACGTTCGAGGCTTT 180
Query 490 ATCTGTTGTTCTTCACCAGTATATGATGTGGTTACGATATACAACCCTACCACGAGGCAA 549
|| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 181 ATATGTTGTTCTTCATCAGTATATGATTTGGTTACCATATACAACCCTACCACGAGGCAA 240
Query 550 TG-CATTCCTTTACGTACCGAAGATCGAATCAATG 583
|| | ||||||||| || |||||||||||||||
Sbjct 241 TGTC-TTCCTTTAC---CC-AAGATCGAATCAATG 270
Score = 357 bits (193), Expect = 3e-97
Identities = 248/273 (91%), Gaps = 10/273 (4%)
Strand=Plus/Plus
Query 1417 ATATACAACCCTACAACGAGACAATCCGTTGGTTTACCCGAGATCGGAGCCCCAG-AGAC 1475
|||||||||||||| |||| || ||||||||||||||| ||||||||| |||||| | ||
Sbjct 1204 ATATACAACCCTACCACGAAACGATCCGTTGGTTTACCTGAGATCGGACCCCCAGTA-AC 1262
Query 1476 AGAGTTCCAGAAATGTAACTGTCTTTTTGGATACGACCCTGTCATGGATCAATACAAAGT 1535
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1263 AGGGTTCCGGAAATGTAACTGTCTTTTTGGATACGATCCTGTCATGGATCAATACAAAGT 1322
Query 1536 GTTGTCCATGGTTATTGATTTTCGAGAGCTTACGCAAACTTTTCATGTTTACACATTGGG 1595
||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1323 GTTGTCCATGGTTTTTGATTTCCGAGAGCTTACGCAAACTTTTCATGTTTTCACATTGGG 1382
Query 1596 ACAGAGTCAATCTTGGAGGAGAATCCAAGGCATTGATGATGCCATGATGGGAAACTTTTT 1655
|||||||||||||||||||||||||||||||||| | ||| ||| || |||||||||
Sbjct 1383 ACAGAGTCAATCTTGGAGGAGAATCCAAGGCATT-A--ATG--ATG--GG-AAACTTTTT 1434
Query 1656 CCAAGCGCCAAGGGGGTTTGCGTCGATGGGACT 1688
||||||||| |||| ||||| |||||||||||
Sbjct 1435 CCAAGCGCCGTGGGGATTTGCATCGATGGGACT 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109537589190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5