BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923779
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35430.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 296 1e-79
> AT2G35430.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:14900872-14902385 REVERSE LENGTH=1029
Length=1029
Score = 296 bits (160), Expect = 1e-79
Identities = 208/231 (90%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 11 GCGGTGGACGATGGAGCTCCTTCTCCCTGTGAGCAGAGTGGCAAGAGCGCGAGGAGTAGG 70
|||| ||| || ||||||||| | | ||||||||| |||||||||||| || ||||||||
Sbjct 444 GCGGAGGAAGACGGAGCTCCTCCGCGCTGTGAGCAAAGTGGCAAGAGCTCGCGGAGTAGG 385
Query 71 GACAAGTTCCGGAGCGGAATTTGAAGCAAAGCTTCGTCTTGAAAAACGATTTCCTGATCT 130
|||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 384 GACAAGTTCCGGCGCGGAATTTGAAGCAAAGCTTCGTCTTGAAGAACGATTTCCCGATCT 325
Query 131 CGGAGGAGGA--AA-ATCGTGTCTTCTTGCTCGGAGACTCTGCATCATCAGAGTTTATTG 187
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 324 CGGAGGAGGAGGAAGATCGTGTCTTCTTGCTCGGAGACTCTGCGCCATCAGAGTTTATGG 265
Query 188 CCCAGACACGGTTGTAATCATCTTCAGTGGTGCAGAAGGAACTGTCGCCGG 238
||||||||||| |||||||||| ||||||| |||| ||||||||||||||
Sbjct 264 CCCAGACACGGCTGTAATCATCCTCAGTGGCCCAGACGGAACTGTCGCCGG 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21665399819
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5