BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923788 Length=1618 Score E Sequences producing significant alignments: (Bits) Value AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2466 0.0 > AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19608731-19610452 REVERSE LENGTH=1722 Length=1722 Score = 2466 bits (1335), Expect = 0.0 Identities = 1496/1573 (95%), Gaps = 14/1573 (1%) Strand=Plus/Plus Query 20 AATGGCGATTCGAACATTCTCTTCTCTTGTTCGCGCTCTTCACCAAACCCCTAAATCTCA 79 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 24 AATGGCGATTCGAACAGTCTCTTCTCTTGTTCGCGCTCTTTACCAAACCCCTAAATCTCA 83 Query 80 GTCATTTCGTTTCTTCTCTACTCTTCTACACGATCCACCATCACCCGAACTAGTAAACGA 139 |||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 84 ATCATTTCGCATCTTCTCTACACTTCTACACGATCCACCATCACCAGATCTAGTAAACGA 143 Query 140 GATCTCCCGCGTTCTGAGCGATCACCGGAACCCTAAAGACGACCTCGAGCACACTCTCGC 199 |||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| | Sbjct 144 GATCTCCCGCGTCCTGAGCGACCACCGGAACCCTAAAGACGATCTCGAACACACTCTTGT 203 Query 200 CGCTTACTCTCCCCGAGTTTCGTCGAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 259 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 204 CGCTTACTCTCCCCGAGTTTCGTCAAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 263 Query 260 TCTCGGCTTTCCTGCTCATAGATTCTTTCTATGGGCAAAAAGAATCCCAGATTTTGAACA 319 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| Sbjct 264 TCTCGGCTTTCCTGCTCACAGATTCTTTCTATGGGCAAGAAGAATCCCAGATTTTGCACA 323 Query 320 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTTGTAGTAAGCAATTCGCTTT 379 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 324 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTAGTAGCAAGCAATTCGCTTT 383 Query 380 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTACTTCTAAAGT 439 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 384 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTAGTTCTAAAGT 443 Query 440 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTAGTAGAGC 499 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 444 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTTGTAGAGC 503 Query 500 TTTTAATCGGATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 559 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 TTTTAATCGAATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 563 Query 560 GCATTCGCTTTGCGATAGGAAACATGTGAATCATGCTCAGGAGTTTTTCGATAAAGCGAA 619 ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| Sbjct 564 GCATTCGCTTTGCGATAAGAAACATGTGAATCATGCTCAAGAGTTTTTCGGTAAAGCGAA 623 Query 620 AGGGTTCGGGATTGTACCGAGTGCGAAGACGTATAGCATTTTGGTTAGAGGGTGGGCGAG 679 ||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 624 AGGATTTGGGATTGTACCTAGTGCGAAGACGTATAGCATTTTGGTTAGAGGTTGGGCAAG 683 Query 680 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGA-ATAATTGTG 738 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 684 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGAGA-AATTGTG 742 Query 739 TTGTGGATTTGCTTGCTTACAATGCTCTTTTGGACGCTTTGTGTAAATCTGGTGATGTTG 798 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 743 TTGTGGATTTGCTTGCTTACAATGCTCTTTTAGATGCTTTGTGTAAATCTGGTGATGTTG 802 Query 799 ATGGAGCTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCGGATGCGTATA 858 |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 803 ATGGAGGTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCAGACGCGTATA 862 Query 859 GTTTTGCGATATTCATTCACT-CGTACTGCGATGCAAGCGATGTTCACTCGGCTTATAAA 917 |||| || ||||||||||| | ||||||| ||||| | |||||||||||||||||||| Sbjct 863 GTTTCGCTATATTCATTCA-TGCGTACTGTGATGCGGGTGATGTTCACTCGGCTTATAAG 921 Query 918 GTACTTGATCGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACATTTAACCATATC 977 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 922 GTACTTGATAGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACGTTTAACCATATC 981 Query 978 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTACTTACTGTTAGACGAGATG 1037 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 982 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTATTTACTGTTAGACGAGATG 1041 Query 1038 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCTTACCACTGC 1097 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1042 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCGTACCACTGC 1101 Query 1098 GATCACTGCGAAGTGAACCGAGCAACAAAGCTGTTATCTAGAATGGATAGAACCAAGTGT 1157 |||||||||||||| || |||||||||||||||||||| || |||||||||||||||||| Sbjct 1102 GATCACTGCGAAGTAAATCGAGCAACAAAGCTGTTATCGAGGATGGATAGAACCAAGTGT 1161 Query 1158 TTACCGGATAGACACACTTACAACATGGTTCTCAAGTTG-TTGATACGAATAGGGAGATT 1216 ||||| ||||||||||||||||| ||||||||||||||| || ||| ||||||||||||| Sbjct 1162 TTACCAGATAGACACACTTACAATATGGTTCTCAAGTTGCTT-ATAAGAATAGGGAGATT 1220 Query 1217 TGACCGCG-TGACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1275 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1221 TGACCGCGCT-ACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1279 Query 1276 CGACTTACACTGTGATGATTCATGGGTTAGTGAGGAAGAAAGGGAAGTTAGAGGAAGCTT 1335 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1280 CGACTTACACTGTGATGATTCATGGGTTGGTGAGAAAGAAAGGGAAGTTAGAGGAAGCTT 1339 Query 1336 GTAGGTACTTTGAGATGATGATTGATGAAGGGATACCGCCGTATTCGACAACGGTTGAGA 1395 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1340 GTAGATACTTTGAGATGATGATTGATGAAGGGATACCACCGTATTCGACAACGGTTGAGA 1399 Query 1396 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1400 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1459 Query 1456 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCGAGATATGGCGGTTGAGATGAGAGGAAAGA 1515 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1460 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCAAGATATGGCGGTTGAGATGAGAGGGAAGA 1519 Query 1516 GAAGGAGATTGGGACGTCGAAGTGAAGGAAGTGAAgatgatgatgatgatgatgatTTTG 1575 ||||||||||||||||| |||||||| || | | | ||| ||||||||||||||||||| Sbjct 1520 GAAGGAGATTGGGACGTAGAAGTGAA--AA-T-A-G-TGAAGATGATGATGATGATTTTG 1573 Query 1576 AGCTTCAAAGAGA 1588 ||||| ||||||| Sbjct 1574 AGCTTGAAAGAGA 1586 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79919267640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5