BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923788
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2466 0.0
> AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:19608731-19610452 REVERSE LENGTH=1722
Length=1722
Score = 2466 bits (1335), Expect = 0.0
Identities = 1496/1573 (95%), Gaps = 14/1573 (1%)
Strand=Plus/Plus
Query 20 AATGGCGATTCGAACATTCTCTTCTCTTGTTCGCGCTCTTCACCAAACCCCTAAATCTCA 79
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 24 AATGGCGATTCGAACAGTCTCTTCTCTTGTTCGCGCTCTTTACCAAACCCCTAAATCTCA 83
Query 80 GTCATTTCGTTTCTTCTCTACTCTTCTACACGATCCACCATCACCCGAACTAGTAAACGA 139
|||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 84 ATCATTTCGCATCTTCTCTACACTTCTACACGATCCACCATCACCAGATCTAGTAAACGA 143
Query 140 GATCTCCCGCGTTCTGAGCGATCACCGGAACCCTAAAGACGACCTCGAGCACACTCTCGC 199
|||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 144 GATCTCCCGCGTCCTGAGCGACCACCGGAACCCTAAAGACGATCTCGAACACACTCTTGT 203
Query 200 CGCTTACTCTCCCCGAGTTTCGTCGAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 259
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 204 CGCTTACTCTCCCCGAGTTTCGTCAAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 263
Query 260 TCTCGGCTTTCCTGCTCATAGATTCTTTCTATGGGCAAAAAGAATCCCAGATTTTGAACA 319
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct 264 TCTCGGCTTTCCTGCTCACAGATTCTTTCTATGGGCAAGAAGAATCCCAGATTTTGCACA 323
Query 320 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTTGTAGTAAGCAATTCGCTTT 379
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 324 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTAGTAGCAAGCAATTCGCTTT 383
Query 380 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTACTTCTAAAGT 439
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 384 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTAGTTCTAAAGT 443
Query 440 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTAGTAGAGC 499
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 444 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTTGTAGAGC 503
Query 500 TTTTAATCGGATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 559
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TTTTAATCGAATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 563
Query 560 GCATTCGCTTTGCGATAGGAAACATGTGAATCATGCTCAGGAGTTTTTCGATAAAGCGAA 619
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 564 GCATTCGCTTTGCGATAAGAAACATGTGAATCATGCTCAAGAGTTTTTCGGTAAAGCGAA 623
Query 620 AGGGTTCGGGATTGTACCGAGTGCGAAGACGTATAGCATTTTGGTTAGAGGGTGGGCGAG 679
||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 624 AGGATTTGGGATTGTACCTAGTGCGAAGACGTATAGCATTTTGGTTAGAGGTTGGGCAAG 683
Query 680 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGA-ATAATTGTG 738
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 684 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGAGA-AATTGTG 742
Query 739 TTGTGGATTTGCTTGCTTACAATGCTCTTTTGGACGCTTTGTGTAAATCTGGTGATGTTG 798
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 743 TTGTGGATTTGCTTGCTTACAATGCTCTTTTAGATGCTTTGTGTAAATCTGGTGATGTTG 802
Query 799 ATGGAGCTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCGGATGCGTATA 858
|||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 803 ATGGAGGTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCAGACGCGTATA 862
Query 859 GTTTTGCGATATTCATTCACT-CGTACTGCGATGCAAGCGATGTTCACTCGGCTTATAAA 917
|||| || ||||||||||| | ||||||| ||||| | ||||||||||||||||||||
Sbjct 863 GTTTCGCTATATTCATTCA-TGCGTACTGTGATGCGGGTGATGTTCACTCGGCTTATAAG 921
Query 918 GTACTTGATCGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACATTTAACCATATC 977
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 922 GTACTTGATAGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACGTTTAACCATATC 981
Query 978 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTACTTACTGTTAGACGAGATG 1037
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 982 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTATTTACTGTTAGACGAGATG 1041
Query 1038 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCTTACCACTGC 1097
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1042 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCGTACCACTGC 1101
Query 1098 GATCACTGCGAAGTGAACCGAGCAACAAAGCTGTTATCTAGAATGGATAGAACCAAGTGT 1157
|||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1102 GATCACTGCGAAGTAAATCGAGCAACAAAGCTGTTATCGAGGATGGATAGAACCAAGTGT 1161
Query 1158 TTACCGGATAGACACACTTACAACATGGTTCTCAAGTTG-TTGATACGAATAGGGAGATT 1216
||||| ||||||||||||||||| ||||||||||||||| || ||| |||||||||||||
Sbjct 1162 TTACCAGATAGACACACTTACAATATGGTTCTCAAGTTGCTT-ATAAGAATAGGGAGATT 1220
Query 1217 TGACCGCG-TGACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1275
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TGACCGCGCT-ACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1279
Query 1276 CGACTTACACTGTGATGATTCATGGGTTAGTGAGGAAGAAAGGGAAGTTAGAGGAAGCTT 1335
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1280 CGACTTACACTGTGATGATTCATGGGTTGGTGAGAAAGAAAGGGAAGTTAGAGGAAGCTT 1339
Query 1336 GTAGGTACTTTGAGATGATGATTGATGAAGGGATACCGCCGTATTCGACAACGGTTGAGA 1395
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1340 GTAGATACTTTGAGATGATGATTGATGAAGGGATACCACCGTATTCGACAACGGTTGAGA 1399
Query 1396 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1459
Query 1456 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCGAGATATGGCGGTTGAGATGAGAGGAAAGA 1515
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1460 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCAAGATATGGCGGTTGAGATGAGAGGGAAGA 1519
Query 1516 GAAGGAGATTGGGACGTCGAAGTGAAGGAAGTGAAgatgatgatgatgatgatgatTTTG 1575
||||||||||||||||| |||||||| || | | | ||| |||||||||||||||||||
Sbjct 1520 GAAGGAGATTGGGACGTAGAAGTGAA--AA-T-A-G-TGAAGATGATGATGATGATTTTG 1573
Query 1576 AGCTTCAAAGAGA 1588
||||| |||||||
Sbjct 1574 AGCTTGAAAGAGA 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79919267640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5