BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923790
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52670.1 | Symbols: | Single hybrid motif superfamily prote... 1334 0.0
AT3G15690.2 | Symbols: | Single hybrid motif superfamily prote... 302 5e-81
> AT1G52670.1 | Symbols: | Single hybrid motif superfamily protein
| chr1:19614942-19617572 REVERSE LENGTH=1154
Length=1154
Score = 1334 bits (722), Expect = 0.0
Identities = 822/871 (94%), Gaps = 4/871 (0%)
Strand=Plus/Plus
Query 3 TCCTGCTCCAATCTTCCTCCATGAATTCCTGTAGCTTAGGAGCTCCTAGAGTTAGAATTT 62
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 133 TCCTACTCCAGTCTTCCTCCATGAATTCCTGTAGCTTAGGAGCTCCTAAAGTTAGAATTT 192
Query 63 CTGCAACAAGTTTCAGTAGATTAAGATGTGGAAACTTGCTGATACCCAACAATCAAAGAC 122
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 193 TTGCAACAAATTTCAGTAGATTAAGATGTGGAAACTTGCTGATACCGAACAATCAAAGAC 252
Query 123 TTTTTATTGACCAAAGCCCCATCAAGAATCTGACTCAGAGGACGACGACTCTGCGATCTG 182
| ||| ||||||||||||| || ||| |||||| || || || ||||||||||||||||
Sbjct 253 TATTTGTTGACCAAAGCCCTATGAAGTATCTGAGTCTGA-GA--ACGACTCTGCGATCTG 309
Query 183 TGAAAGCTATCCAATTGTCTACTGTCCCACCTGCAGAAACACAAGCTATTGCAGACGTAG 242
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 310 TGAAAGCTATCCAATTGTCTACTGTCCCACCTGCAGAAACAGAAGCTATTGCAGACGTAA 369
Query 243 AAGATTCTGAAGAGACCAAATCAACTGTTGTGAATACTCAGCTTATTCCCAACTCCTCTG 302
|||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||| |
Sbjct 370 AAGATTCTGACGAGACCAAATCAACTGTTGTGAATACTCACCTCATGCCCAAGTCCTCCG 429
Query 303 AGGTGAAAGCACTTATCAGTGAAATAACTGATTCCACATCAATTGCAGAGTTTGAACTGA 362
||||| ||||||| ||||| ||||| || |||||| |||| ||||||||||||||||| |
Sbjct 430 AGGTGGAAGCACTCATCAGCGAAATCACCGATTCCTCATCCATTGCAGAGTTTGAACTCA 489
Query 363 AACTGGGAGGTTTCCGCCTATATGTAGCAAGGAAATTAGCTGACCAAAGTAGTCCACCGC 422
||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |
Sbjct 490 AACTGGGAGGTTTCCGCCTGTATGTAGCAAGGAAATTAACTGACGAAAGTAGTCCACCAC 549
Query 423 CTCAGCAAATTCCGCCTGTGGTTGCTGCAAGCGCAACTCCTGAGGGGGTTCATACAAATG 482
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 550 CTCAGCAAATTCAGCCTGTGGTTGCTGCAAGCGCAACTCCTGAGGGGGTTCACACTAATG 609
Query 483 GCTCAGCCACTTCTTCGTCATTGGCTATCACAAAAACATCAACTTCTTCGGCAGACAGAC 542
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 610 GCTCAGCTACTTCTTCGTCATTGGCTATCACAAAAACATCATCTTCTTCGGCAGACAGAC 669
Query 543 CACAAACACTCGCTAACAAAGCTGCTGATCAGGGTTTAGTGATTCTCCAATCTCCAACGG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CACAAACACTCGCTAACAAAGCTGCTGATCAGGGTTTAGTGATTCTCCAATCTCCAACGG 729
Query 603 TCGGTTATTTCAGGAGATCCAAGACCATAAAAGGCAAACGCACTCCTACAATCTGTAAAG 662
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 730 TCGGTTATTTCAGGAGATCCAAGACCATAAAAGGGAAACGCACTCCTACAATCTGTAAAG 789
Query 663 AGAAAGACATAGTGAAAGAAGGTCAAGTTCTATGCTACATCGAACAACTCGGTGGCCAAA 722
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 790 AGAAAGACATAGTGAAAGAAGGTCAAGTTCTATGCTACATTGAACAGCTCGGTGGCCAAA 849
Query 723 TCCCAGTTGAGTCTGATGTTTCCGGTGAGATTGTCAAAATACTCCGCGAAGATGGCGAGC 782
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 850 TCCCAGTTGAGTCTGATGTTTCCGGAGAGATTGTCAAAATACTCCGCGAAGATGGCGAGC 909
Query 783 CTGTAGGATACAATGATGCTCTCATCACAGTTCTTCCTTCATTTCCTGGCATCAAGAAGC 842
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 910 CTGTAGGATACAACGATGCTCTCATCACAGTACTTCCCTCATTTCCTGGCATCAAGAAGC 969
Query 843 TTCAGTAAGAACTGATTTTGGCTTAAATTGT 873
|||||||||||||||||||||||||| ||||
Sbjct 970 TTCAGTAAGAACTGATTTTGGCTTAA-TTGT 999
> AT3G15690.2 | Symbols: | Single hybrid motif superfamily protein
| chr3:5316916-5319613 FORWARD LENGTH=1162
Length=1162
Score = 302 bits (163), Expect = 5e-81
Identities = 256/299 (86%), Gaps = 13/299 (4%)
Strand=Plus/Plus
Query 562 AGCTGCTGATCAGGGTTTAG-TGATTCTCCAATCTCCAACGGT-CGGTTATTTCAGGAGA 619
||| |||||||||||||| | |||||||||||||||||| || |||| |||||||||
Sbjct 696 AGCCGCTGATCAGGGTTT-GATGATTCTCCAATCTCCAAAAGTAGGGTT-CTTCAGGAGA 753
Query 620 TCCAAGACCATAAAAGGCAAACGCACT-CCTACAATC-TGTAAAGAGAAAGA-CATAGTG 676
||||| |||||||| || |||||| || ||| | || |||||||||||||| || ||||
Sbjct 754 TCCAAAACCATAAAGGGTAAACGC-CTGCCTTC-GTCTTGTAAAGAGAAAGACCA-AGTG 810
Query 677 AAAGAAGGTCAAGTTCTATGCTACATCGAACAACTCGGTGGCCAAATCCCAGTTGAGTCT 736
|||||||||||| |||| |||||||| |||||||||||||||||| | ||| | ||||||
Sbjct 811 AAAGAAGGTCAAATTCTGTGCTACATTGAACAACTCGGTGGCCAATTTCCAATCGAGTCT 870
Query 737 GATGTTTCCGGTGAGATTGTCAAAATACTCCGCGAAGATGGCGAGCCTGTAGGATACAAT 796
|||||| |||| ||| | ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 871 GATGTTACCGGCGAGGTAGTCAAGATACTCCGAGAAGATGGAGAGCCTGTAGGATACAAT 930
Query 797 GATGCTCTCATCAC-AGTTCTTCCTTCATTTCCTGGCATCAAGAAGCTTCAGTAAGAAC 854
|||||||||||| | | | ||||| || || ||||| |||||||||||||||||| |||
Sbjct 931 GATGCTCTCATCTCCA-TCCTTCCATCCTTCCCTGGGATCAAGAAGCTTCAGTAA-AAC 987
Score = 291 bits (157), Expect = 1e-77
Identities = 404/519 (78%), Gaps = 33/519 (6%)
Strand=Plus/Plus
Query 14 TCTTCCTCCATGAATTCCTGTAGCTTAGGAGCTCCTAGAGTTAGAATTTCTGCAACA-AG 72
||| |||||||| |||||||||| |||||| ||||| | ||| ||| || ||| | |
Sbjct 184 TCTCCCTCCATGGCTTCCTGTAGCCTAGGAGTTCCTAAAATTAAAATCTCGGCAGTAGAC 243
Query 73 TTTCAGTAGATTAAGATGTGGAAACTTGCTGATACCCA-ACAATCAAAGACT-TTTTATT 130
|| |||||| |||||| ||||| ||| |||||| ||| ||||||||||| | || ||
Sbjct 244 CTT-AGTAGAGTAAGATCTGGAAGCTTACTGATA-CCATACAATCAAAGA-TCATTGCTT 300
Query 131 -GACCAAAGCCCCA-TCAAG-AATCTGACTCAGAGGACGACGACTCTGCGATCTGTGAAA 187
|| ||||| ||| | ||| | | ||| || || ||| || | | || |||||||||||
Sbjct 301 CGA-CAAAG-GCCAGTGAAGTACT-TGAGTCTGAAGACAAC-A-TTTG-GATCTGTGAAA 354
Query 188 GCTATCCAATTGTCTACTGTCCCACCTGCAGAAACA-CAAGCTATTGCAGACGTAGAAGA 246
||| ||||| |||||||||||||| ||||||||||| | ||||| | ||| ||| ||||
Sbjct 355 GCTGTCCAAGTGTCTACTGTCCCAACTGCAGAAACATC-AGCTACTATAGAAGTAAAAGA 413
Query 247 TTCTGAAGAGACCAAATCAACT-GTTGTGAATACTCAGCTTATTCCCAACTCC-TCTGAG 304
|||| |||||| ||| ||| || | | | || |||||||| ||||||| || ||||||
Sbjct 414 TTCTAAAGAGATCAAGTCATCTCGAT-TAAACGCTCAGCTTGTTCCCAA-GCCTTCTGAG 471
Query 305 GTGAAAGCACTTATCAGTGAAATA-ACTGATTCCACATCAATTGCAGAGTTTGAACTGAA 363
||| |||| ||| | | ||||||| | ||||| |||||||||||||||||||||||||
Sbjct 472 GTGGAAGCCCTTGTAACTGAAATATGC-GATTCTTCATCAATTGCAGAGTTTGAACTGAA 530
Query 364 ACTGGGAGGTTTCCGCCTATATGTAGCAAGGAA-ATTAGCTGACCAA-AGTAGTCCACCG 421
|||||| |||||||| ||||||||||||||||| || ||||||| || ||||||| ||
Sbjct 531 ACTGGGGGGTTTCCGACTATATGTAGCAAGGAACAT-AGCTGAC-AATAGTAGTCTACAA 588
Query 422 CCTCAGCAAATTCC-GCCTGTGGTTGCTGCAAGCGCAACT-CCTGAGGGGGTTCA-TACA 478
|||| || || ||| || |||| |||| ||| |||||| || ||| | | | | |
Sbjct 589 CCTCCGCCAACTCCTGC-TGTGACTGCTTCAAATGCAACTACC-GAGAGTCCTGAGT-CG 645
Query 479 AATGGCTCAGCCACTTCTTCGTCATTGGCTATCACAAAA 517
||||| ||||| | ||| | ||| |||||||| |||||
Sbjct 646 AATGGATCAGCTTCCTCTACTTCACTGGCTATCTCAAAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5