BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923793

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G07526.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   276    1e-73
  AT3G29790.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   243    1e-63


> AT4G07526.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G33528.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 189/208 (91%), Gaps = 4/208 (2%)
 Strand=Plus/Plus

Query  15   AAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGATTTT  74
            |||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |||
Sbjct  562  AAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTT  621

Query  75   TCAGA---TATAATGAATCTCGTCGTTGACGACAGTGACATAGATGAAGACTGCTGTATT  131
            |||||   ||||||||||||||||||||| |||||||| ||||||||||||  | || ||
Sbjct  622  TCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTT  681

Query  132  TGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTAAGAGAAAGGAAGAG  191
            ||||| ||| |||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct  682  TGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTAAGAGAAAGGAAGAG  740

Query  192  ACTACAACAACCTGTGAAGCTGAGCTAA  219
            ||||||||||||| ||||||||||||||
Sbjct  741  ACTACAACAACCTATGAAGCTGAGCTAA  768


> AT3G29790.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G33528.1); 
Has 40 Blast hits to 40 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11693095-11693622 
REVERSE LENGTH=435
Length=435

 Score =  243 bits (131),  Expect = 1e-63
 Identities = 171/190 (90%), Gaps = 3/190 (2%)
 Strand=Plus/Plus

Query  15   AAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGATTTT  74
            ||||||||| |||||||||||||| | ||||||||||||||||| ||||| ||||| |||
Sbjct  58   AAGGAAATGAAATTAGTCTCTTCTGATGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTT  117

Query  75   TC---AGATATAATGAATCTCGTCGTTGACGACAGTGACATAGATGAAGACTGCTGTATT  131
            ||   ||||||  |||||||||||||||| |||||||| ||||||||||| ||| |||||
Sbjct  118  TCAGAAGATATTGTGAATCTCGTCGTTGAAGACAGTGAGATAGATGAAGATTGCAGTATT  177

Query  132  TGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTAAGAGAAAGGAAGAG  191
            ||||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  178  TGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTCCGAAAACCTAAGAGAAAGGAAGAG  237

Query  192  ACTACAACAA  201
            ||||||||||
Sbjct  238  ACTACAACAA  247



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5