BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923796

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52696.1 | Symbols:  | Pseudogene of AT1G52695; phospholipas...   571    3e-162


> AT1G52696.1 | Symbols:  | Pseudogene of AT1G52695; phospholipase/carboxylesterase 
family protein | chr1:19624922-19625777 
REVERSE LENGTH=514
Length=514

 Score =  571 bits (309),  Expect = 3e-162
 Identities = 447/509 (88%), Gaps = 27/509 (5%)
 Strand=Plus/Plus

Query  171  ATAAAATGGATTTG-CCCGACTGCTCCTAAGCGTCCCGTTACCTCCTTGGGTGGGGAGGT  229
            |||||||||| ||| |||||||||||||| |||||||||||||||| | || ||||||||
Sbjct  10   ATAAAATGGA-TTGTCCCGACTGCTCCTATGCGTCCCGTTACCTCCATAGGCGGGGAGGT  68

Query  230  AACCACTGC----------------AT---GGTGCGACATGACAAAAGCTTCTGAGAACA  270
            |||||||||                ||   ||||||||||||||||| ||||||||||||
Sbjct  69   AACCACTGCATGTAAGATTAGATTAATCAGGGTGCGACATGACAAAACCTTCTGAGAACA  128

Query  271  TGCTAGATGATTTTGAAAATTTAAATGATGTAAA-TGAATATATTACCAGCATTTTCTCT  329
            |||||||||||||||||||||||||| ||  ||| | | | |||||| ||| ||||||||
Sbjct  129  TGCTAGATGATTTTGAAAATTTAAATTATACAAACTCATT-TATTACGAGCCTTTTCTCT  187

Query  330  TGTGAACCAGAAAATGTTATGAAAGGACTAGGAGGAATCGGCTTGGGTGCAGCACAAGCT  389
            | |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  188  TCTGAACCAGACCATGTTATGAAAGGAGTAGGAGGAATCGGCTTGGGTGCAGCACAAGCT  247

Query  390  CTCTATTATACGAGTTATTATGCCTTTGGATGGGTTCCCATAAGCCCACAAATTGTTATA  449
            || ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  248  CTATATTATACGAGTTGTTATGCGTTTGGATGGGTTCCCATTAGCCCACAAATTGTTATA  307

Query  450  -GGAATCAATGGTTGGCTTCCTGGATGGAGGAGATTAGAATACAATATGTGTAATACTAC  508
             ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| 
Sbjct  308  AGGA-TCAATGGTTGGCTTCCTGGCTGGAGGAGATTAGAATACAATATGTGTAACACTAA  366

Query  509  TTTAGGGGCTGCAAATCGTGCTGCGACATCACAA-ATCTTACTTATGCATGGAACTTCTG  567
            ||| ||| |||||||||||||||| |||||| || || |||||||||||||| ||| |||
Sbjct  367  TTTTGGGACTGCAAATCGTGCTGCAACATCA-AATATTTTACTTATGCATGGGACTGCTG  425

Query  568  ATGATGTTATTTCCTCTGCGTTTGGATACAAATGTGCTGACTCCTTTCGAAAAGCTGGAT  627
            ||||||||||| ||||||| |||||||||||||||||||||||| ||||||  |||||||
Sbjct  426  ATGATGTTATTCCCTCTGCATTTGGATACAAATGTGCTGACTCCCTTCGAATGGCTGGAT  485

Query  628  TTCCAACTTTGTTCAAACAATGCGGAGGG  656
            ||||||| |||||||||||||||||||||
Sbjct  486  TTCCAACCTTGTTCAAACAATGCGGAGGG  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34510858989


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5