BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923797

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52696.1 | Symbols:  | Pseudogene of AT1G52695; phospholipas...   470    8e-132
  AT1G52695.1 | Symbols:  | alpha/beta-Hydrolases superfamily pro...   405    2e-112


> AT1G52696.1 | Symbols:  | Pseudogene of AT1G52695; phospholipase/carboxylesterase 
family protein | chr1:19624922-19625777 
REVERSE LENGTH=514
Length=514

 Score =  470 bits (254),  Expect = 8e-132
 Identities = 296/316 (94%), Gaps = 3/316 (1%)
 Strand=Plus/Plus

Query  238  CAT-TTATGAAAGGATTAGGAGGAGTTGGATTGGGTGCAGCACAAGCTCTCTATTATACG  296
            ||| ||||||||||| |||||||| | || |||||||||||||||||||| |||||||||
Sbjct  200  CATGTTATGAAAGGAGTAGGAGGAATCGGCTTGGGTGCAGCACAAGCTCTATATTATACG  259

Query  297  AGTTGTTATGCTTTTGGATGGGTTCCTATAAGCCCACAAATTGTTATAGGGATCAATGGT  356
            ||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct  260  AGTTGTTATGCGTTTGGATGGGTTCCCATTAGCCCACAAATTGTTATAAGGATCAATGGT  319

Query  357  TGGCTTCCTGGCTGGAGGAGCTTAGAATACAATATGTGTAATACTAATTTTGGGACAGCA  416
            |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct  320  TGGCTTCCTGGCTGGAGGAGATTAGAATACAATATGTGTAACACTAATTTTGGGACTGCA  379

Query  417  AATCGTGCTGCAACATCACGA-ATCTTACTTATGCATGGAACTTCTGATGATGTTATTCC  475
            ||||||||||||||||||  | || |||||||||||||| ||| ||||||||||||||||
Sbjct  380  AATCGTGCTGCAACATCA-AATATTTTACTTATGCATGGGACTGCTGATGATGTTATTCC  438

Query  476  CTCTGCATTTGGATACAAATGTGCTGACTCCCTTCGAATGTCTGGATTTCCAACCTTGTT  535
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  439  CTCTGCATTTGGATACAAATGTGCTGACTCCCTTCGAATGGCTGGATTTCCAACCTTGTT  498

Query  536  CAAACAATGCGGAGGG  551
            ||||||||||||||||
Sbjct  499  CAAACAATGCGGAGGG  514


> AT1G52695.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein 
| chr1:19621238-19623461 REVERSE LENGTH=942
Length=942

 Score =  405 bits (219),  Expect = 2e-112
 Identities = 264/286 (92%), Gaps = 2/286 (1%)
 Strand=Plus/Plus

Query  267  TTGGGTGCAGCACAAGCTCTCTATTATACGAGTTGTTATGCTTTTGGATGGGTTCCTATA  326
            |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct  434  TTGGGTGCAGCACAAGCTCTTTATTATACGAGTTGTTATGCCTTTGGATGGGTTCCCATA  493

Query  327  AGCCCACAAATTGTTATAGGGATCAATGGTTGGCTTCCTGGCTGGAGGAGCTTAGAATAC  386
            | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  494  AACCCACAAATTGTTATAGGGATCAATGGTTGGCTTCCTGGCTGGAGGAGATTAGAATAC  553

Query  387  AATATGTGTAATACTAATTTTGGGACAGCAAATCGTGCTGCAACATCACGAATCTTACTT  446
            ||||||  |||||||||||||||||| ||||||||||||||| |||||  ||||||| ||
Sbjct  554  AATATGAATAATACTAATTTTGGGACCGCAAATCGTGCTGCAGCATCAAAAATCTTAATT  613

Query  447  ATGCATGGAACTTCTGATGATGTTA-TTCCCTCTGCATTTGGATACAAATGTGCTGACTC  505
             |||||||||| ||||||||||| | |||||||| |||| ||||||| ||||||||||||
Sbjct  614  CTGCATGGAACGTCTGATGATGT-AGTTCCCTCTTCATTCGGATACAGATGTGCTGACTC  672

Query  506  CCTTCGAATGTCTGGATTTCCAACCTTGTTCAAACAATGCGGAGGG  551
            |||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct  673  CCTTCGCATGGCTGGATTTCCAACCTTGTTCAAACAATGTGGAGGG  718



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28784166231


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5