BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923799
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52710.1 | Symbols: | Rubredoxin-like superfamily protein |... 289 2e-77
> AT1G52710.1 | Symbols: | Rubredoxin-like superfamily protein
| chr1:19638331-19640223 REVERSE LENGTH=680
Length=680
Score = 289 bits (156), Expect = 2e-77
Identities = 243/282 (86%), Gaps = 18/282 (6%)
Strand=Plus/Plus
Query 288 GGAAGGAGGCTGCTTGACATAGACTACCCTGAAGGCCCTTTTGGTACAAAGGAATCTCCC 347
|||||||||||||||||||| ||| |||||||| | |||||||||||||||||||||||
Sbjct 139 GGAAGGAGGCTGCTTGACATCGACCACCCTGAAAGTCCTTTTGGTACAAAGGAATCTCCT 198
Query 348 GCTGTCGTAAAGTCCTACTATGACAAGAGAATTGTCGGATGCCCTGGTGGTGAAGGCGAG 407
||||||||| ||||||||| ||||||||||| | ||||||||| ||||||||||||||||
Sbjct 199 GCTGTCGTACAGTCCTACTTTGACAAGAGAAATATCGGATGCCGTGGTGGTGAAGGCGAG 258
Query 408 GACGAACACGACGTCGTATGGTTCTGGCTAGAGAAAGGAAAGTCATTTGAATGTCCAGTG 467
|| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 259 GATGGACACGACGTCGTTTGGTTCTGGCTAGATAAAGGAAAGTCATTTGAATGTCCAGTG 318
Query 468 TGCTCTCAATACTTCGAGCTCGAAGTGGTTGGTCCAGGCGGACCACCAGATGGTCACGGT 527
||||| |||||||| | || | | | |||||||||||| ||||| |||
Sbjct 319 TGCTCCCAATACTT-----T-GA-G--------C-A--CGGACCACCAGACGGTCATGGT 360
Query 528 GACGACGAAGACCACCACCATTAATTCCAGTGTTTTCTTAAC 569
||||| |||||||||||||||| ||||| || ||||||||||
Sbjct 361 GACGATGAAGACCACCACCATTGATTCCGGTCTTTTCTTAAC 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5