BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923800
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21230.3 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 230 5e-60
> AT2G21230.3 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:9093624-9096347 REVERSE
LENGTH=2014
Length=2014
Score = 230 bits (124), Expect = 5e-60
Identities = 178/202 (88%), Gaps = 11/202 (5%)
Strand=Plus/Plus
Query 1 AACCTAGGCATTCTCGGTATATGTCGCAACCATCGTCTTTCTTCTCCTTTGATTCATTGC 60
||||||| |||||||| | |||||||||||| || |||||||||||||||||||||||||
Sbjct 352 AACCTAGACATTCTCGCTCTATGTCGCAACCGTCTTCTTTCTTCTCCTTTGATTCATTGC 411
Query 61 CGCCGTCAAAT-C--C-G---C--CGGTTTCGGTGTCGGTGGAGGAAAAAACCGGCGCCG 111
|||||| |||| | | | | |||||||||||||||||||||| |||||||| ||||
Sbjct 412 CGCCGTTAAATCCTTCTGCTCCGTCGGTTTCGGTGTCGGTGGAGGAGAAAACCGGTGCCG 471
Query 112 GATTTAGCCCCTC-TCTGCCTCTGTCACCGTTTACGATGTGTCATTCTTCTAGCTCTGGG 170
||||||| || || | |||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 472 GATTTAGTCCTTCGT-TGCCTCCGTCACCGTTTACGATGTGTCATTCTTCTAGCTCTAGG 530
Query 171 AACGCCGGAGATGGGGAGAATC 192
|||||||||||||| |||||||
Sbjct 531 AACGCCGGAGATGGAGAGAATC 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9701675557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5