BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923808
Length=3214
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52780.1 | Symbols: | Protein of unknown function (DUF2921)... 4874 0.0
> AT1G52780.1 | Symbols: | Protein of unknown function (DUF2921)
| chr1:19658643-19662181 FORWARD LENGTH=3539
Length=3539
Score = 4874 bits (2639), Expect = 0.0
Identities = 3042/3235 (94%), Gaps = 34/3235 (1%)
Strand=Plus/Plus
Query 1 CTTCTACTGTTCTTGTCACTATGAAAACGGTAATAAAtctccttcctttgatctttctct 60
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 184 CTTCTTCTGTTCTTGTCAGTATGAAAACGGTAATAAATCTCCTTCCTTTGCTCTTTCTCT 243
Query 61 catttggg-t--tcttctcttctctcgtaattgcttccttctcGGAAATGGAGCCCATAC 117
|||||||| | ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 244 CATTTGGGTTCCTCTTCTCTTCTCTAGTAATTGCTTCCTTCTCGGAAATGGAGCCCGTAC 303
Query 118 CTGTTTTTGAATCAATCGGTGAACACAGAGATGAATCCTCCCCTAAGATTAGCTACGATC 177
|| | |||||||||||||| |||||||||||||||||| | ||||||||||| |||||||
Sbjct 304 CTATGTTTGAATCAATCGGCGAACACAGAGATGAATCCGCACCTAAGATTAGTTACGATC 363
Query 178 GGATCAATGAAGTGAAGAGAAAA-TGCAAATCAGTGTTATCTTCAGCTTCTGAGTTAAAG 236
| |||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 364 GTATCAATGATGTGAAGA-AAAAGTGCAAATCAGTGTTATCTTCAGCTTCTGAATTAAAG 422
Query 237 CTTGAAGATATCTCTAGGGCT-C------A--AAAGAGGAAACTTGGTTTTAAG-TACGG 286
||||||||||||||||| || | | ||| ||||| ||||||||| | |||||
Sbjct 423 CTTGAAGATATCTCTAGAACTCCTAGAAAATCAAAAAGGAATCTTGGTTTT-CGATACGG 481
Query 287 AGATTGGGATCAAGATTCTGGTGATTCTCCGATTCTACCGTTTGATTCAACGAACACA-T 345
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 482 AGATTGGAATCAAGATTCTGGTGATTCTCCGATTCTACCTTTTGATTCAACGAACACACT 541
Query 346 TAAGAAACTCGTCGACGAAGCCTATGAATCTTGTTTCTTTCTCAGTCACAGATCTAGATC 405
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 T-AGAAACTCGTCGACGAAGCCTATGAATCTTGTTTCTTTCTCAGTCACAGATCTAGATC 600
Query 406 TTCCTCATAGAACCAAGAAATACATTGGCGTTAATGGTGTTTTGCTTCTCGCGATCACAA 465
| || ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 601 TCCCACATCGAACCAAGAAATACATAGGCGTCAATGGTGTTTTGCTTCTCGCGATCACAA 660
Query 466 TGTTTAATGAATTACCAAGCTTAAGATCTTATGGGATCCGTGAGTTTGAGTTATGGCCGA 525
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 661 TGTTTAGCGAATTACCAAGCTTAAGATCTTATGGGCTCCGTGAGTTTGAGTTATGGCCAA 720
Query 526 GTCATACTCAGCTTAAGATCTCGTTTCAAGGGATTTATGTTGAGAATGATGATGATGAAA 585
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 GTCATACTCAGCTTAAGATCTCGTTTCAAGGGATTTACGTTGAGAATGATGATGATGAAA 780
Query 586 GAGTTTTGTGTATGCTTGGTGAAACAATGTTACCTTCTCGTGATGAATCTGATTCCTCTA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 GAGTTTTGTGTATGCTTGGTGAAACAATGTTACCTTCTCGTGATGAATCTGATTCTTCTA 840
Query 646 ATCCATGGAAATGGGTTAAGGAACATGACACACCTCCTCTTTTACAAGATGATTTGATTC 705
||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 841 ATCCATGGAAATGGGTTAAAGAACATGACACGCCTCCTCTTTTACAAGATGATATGATTC 900
Query 706 TGCTTCTTCTTCGGTATCCGAAAAGCTTCACATTGACGAAAAGAGTTATTCAAGGAGAGC 765
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 901 TGCTTCTTCTTCGGTACCCGAAAAGCTTCACATTGACTAAAAGAGTGATTCAAGGAGAGC 960
Query 766 TTACTAGTCTAAACCAGAAGCCTAGTCTTAAGTTTTTCGACAAGGTCCATCTTTTTTCTC 825
|||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||
Sbjct 961 TTACAAGTCTAAACCAGAAGCCTAGTCTCAAGCTTTTCGACAAGATCCATCTCTTTTCTC 1020
Query 826 AGCTTGGTAAATCGGTTCGATACGATTTCGTCTCTAATGATTTGGTATCAAAGGCTTGTG 885
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 AGCTTGGGAAATCTGTTCGTTACGATTTCGTCTCTAATGATTTGGTATCAAAGGCTTGCG 1080
Query 886 ATCCATATCCTTATAAAAACGATACTTTTACGAGTTCAGGAA---GTGGTATCAATGTCT 942
||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||
Sbjct 1081 ATCCATATCCTTATAAAAACGATACCTTTACGAGCTCTGGAAGTGGTGGTATCAATGTCT 1140
Query 943 ACAAAGGGAAAGGGTTCTGTGATCTTCTTCAAAGAGTTACTAACCGCGCGCCTCTCACGG 1002
| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1141 ATAAAGAGAAAGGATTCTGTGATCTTCTTCAAAGAGTTACTAACCGCGCGCCTCTAACCG 1200
Query 1003 TTGTACCTAACTGGAAATGCAATGGTACTGATGAGTACTGCAGCAAATTGGGTCCGTTTG 1062
|||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||||
Sbjct 1201 TTGTACCTAACTGGAAATGCCACGGTACAGATGAGTACTGCAGCAAGTTAGGTCCGTTTG 1260
Query 1063 CGTCTGACGGAGATATTAAATTGACGGATGGTAGCTTTAAAGATGTGAAGTTGTATATGC 1122
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1261 CGTTTGACAAAGATATTAAATCAACGGATGGTAGCTTTAAAGATGTGAAGTTGTATATGC 1320
Query 1123 AAAATGTACATTGTGAGGAAACCGCAGCTCGGTCTCAAACCGATGCTGTTACAAAAGTCT 1182
|||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 AAAACGTACATTGCGAGGAAACCGCAGCTCGGTCTCAATCCGATGCTGTTACAAAAGTCT 1380
Query 1183 CGGCGGTTTTTCGTGCTGTTCATCCGAATGAGAATCTTTATATTTCAGGGTTGAGATCAG 1242
||||||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1381 CGGCGGTTTTTCGAGCGGTTCATCCGAATGAGAATCTTTACATTTCAGGGATGAGATCAG 1440
Query 1243 GGATAGACAATATGACTGTTACAGCTGAAGGGATTTGGAAACCGTCTAGCGGGCAGTTAT 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGATAGACAATATGACTGTTACAGCTGAAGGGATTTGGAAACCGTCTAGCGGGCAGTTAT 1500
Query 1303 GTATGGTTGGGTGCAGGCGAGGCCAAGTCGATGGCTGCAACGCTCGTGTCTGTTTGTATA 1362
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1501 GTATGGTTGGTTGCAGGCGAGGCCAAGTCGATGGCTGCAACGCTCGTATTTGTTTGTATA 1560
Query 1363 TTCCAACTACTTTTTCGATAAGGCAGCGAAGTATACTTGTAGGAACTTTCTCCTGCCTAA 1422
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1561 TTCCAACTACTTTTTCGATAAGGCAGCGAAGTATACTTGTAGGAACATTCTCCTGCCTAA 1620
Query 1423 ATACAGAGAAGAATTTGACTCCATCTTTCTTCCCTTTGTCATTTGAGAAGCTTGTGGAGC 1482
| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1621 ACACTGAGAAGAATTTGACTCCGTCTTTCTTCCCTTTGTCGTTTGAGAAGCTTGTGGAGC 1680
Query 1483 CTATGGATATGCAGAATTACTTTCAGTCTTCGGCTTCGCATCCGTTTTATAGTTACTCGA 1542
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1681 CTATGGATATGCAGAATTACTTCCACTCTTCGGCTTCGCATCCGTTTTATAGTTACTCGA 1740
Query 1543 AGTTAGATGATGCTGGTGCCATCCTTGAGAAAAATGAAGAGTTCTCTTTCGGAACAATAA 1602
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||
Sbjct 1741 AGTTAGATGATGCTGGTGCTATCCTTGAGAGAAACGAAGAGTTCTCTTTCGGAACTATAA 1800
Query 1603 TCAAGAAGTCGGTAATGCATTTTCCGAAACTGGAAGACTCTGATGATTTGCTTTCGAGCC 1662
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1801 TCAAGAAGTCGGTAATGCATTTTCCGAAACTAGAAGACTCTGATGATTTGCTTTCGAGCC 1860
Query 1663 TTTCTCTTCTAGCTGAGGACTTGACTTTCCATACCCCTGCATTTACCGACAAGCAGGCCT 1722
|||||||||| ||||||||||||||||||||||| |||||||||||||| || | |||||
Sbjct 1861 TTTCTCTTCTTGCTGAGGACTTGACTTTCCATACACCTGCATTTACCGAGAAACGGGCCT 1920
Query 1723 CAGGG-ACTAATTTCGGCATGGATGTTCTCTCGCTCGGTCCTTTATTCGGACTTTTCTGG 1781
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 C-GGGAACTAATTTCGGCATGGATGTTCTCTCGCTCGGTCCTTTATTCGGACTTTTCTGG 1979
Query 1782 CGTACTTCGAACTTTTCCATTTCGGAACAGACAACTACGACTCCTTACCGCACAAAAGCT 1841
|||||||||||||||||||| |||| ||| || | |||||||||||||||||||||
Sbjct 1980 CGTACTTCGAACTTTTCCATCGCGGATCAG---AC-A--ACTCCTTACCGCACAAAAGCT 2033
Query 1842 GAATACACTGAGAAACAGCTTCTTCTCAATGTATCAGCTCAAATCTCACTTACAGGGGAA 1901
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 2034 GAATACACTGAGAAACAGCTTCTTCTGAACGTATCAGGTCAAATCTCACTTACAGGGGAA 2093
Query 1902 AATTTTGGTAACTTCTCTGTTCTTTACTTGGAAGGTCTTTACGATGAGCATGTTGGGAGA 1961
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2094 AATTTCGGTAACTTCTCTGTTCTTTACTTGGAAGGTCTTTACGATGAGCATGTTGGGAAA 2153
Query 1962 ATGTATCTTGTAGGATGCCGAGACGTGAGAGCCTCGTGGAAAATCTTGTTTGAGAGTCCT 2021
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2154 ATGTATCTTGTTGGATGCAGAGACGTGAGAGCCTCATGGAAAATCTTGTTTGAGAGTCCT 2213
Query 2022 GATCTAGAAGCTGGGCTAGATTGTTTGATCGACGTGGTGGTTTCTTATCCACCTATCAAA 2081
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2214 GATCTTGAAGCTGGGCTAGATTGTTTGATCGACGTGGTGGTTTCTTATCCACCGATCAAA 2273
Query 2082 TCACGGTGGTTGGCTGATCCAACTGCTAAGGTTTCAATATCCAGCAACAGACCAGAAGAT 2141
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2274 TCACGGTGGTTGGCTGATCCAACTGCTAAAGTTTCAATATCTAGCAACAGACCAGAAGAT 2333
Query 2142 GATCCTCTCTATTTTAAAACGGTTAAGCTCAAAACAACTCCTATCTTTTACCGAAGGCAA 2201
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2334 GATCCTCTCTATTTTAAACCTATTAAGCTCAAAACAACTCCTATCTTTTACCGAAGGCAA 2393
Query 2202 CGTGAAGACATTCTTTCTCGTGCAGGCGTTGAAGGAATCCTCAGGGTTCTCACGCTTACA 2261
|| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 2394 CGCGAAGACATTCTTTCTCGTGCAGGCGTTGAAGGGATTCTCAGGGTTCTCACTCTTACA 2453
Query 2262 TTCTCTATCGGTTGTATTACGAGCCAGCTTTTTTATGTCAGTAGCAATACCGACTCGCTT 2321
||||||||||| || || ||||||| ||||||||| || |||||||||||||||||||||
Sbjct 2454 TTCTCTATCGGATGCATCACGAGCCTGCTTTTTTACGTTAGTAGCAATACCGACTCGCTT 2513
Query 2322 CCTTTCGTTTCCCTTGTAATGCTAGGAGTTCAAGCTCTCGGTTATAGCTTGCCGTTGATC 2381
||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2514 CCTTTTGTGTCCCTTGTAATGCTTGGAGTTCAAGCTCTTGGTTATAGCTTGCCGTTGATC 2573
Query 2382 ACTGGAGCAGAGGCTCTCTTTAAAAGAAAAGCAGCTTCAGCAACAACATATGAAACACCT 2441
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 ACCGGAGCAGAGGCTCTCTTTAAAAGAAAAGCAGCTTCAGCAACAACATATGAAACACCT 2633
Query 2442 TCATATGATCTACAGAGAAGTCAATGGTTCAATGTGATTGATTACACTGTGAAGCTCCTC 2501
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2634 TCTTATGATCTACAGAGAAGTCAATGGTTCAATGTGATTGATTACACTGTGAAGCTCCTC 2693
Query 2502 GTCATGGTATGCTTTCTACTTACTCTAAGGCTTTGTCAGAAAGTGTGGAAGTCCCGTGCC 2561
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2694 GTGATGGTCTGCTTTCTACTTACTCTAAGGCTTTGTCAGAAAGTGTGGAAGTCCCGTGCC 2753
Query 2562 AGATTGCTCACTCGAACACCTCAAGAACCGCATAAAGTTCCAAGTGATCGCCGTGTACTT 2621
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2754 AGATTGCTCACTCGAACACCTCAAGAACCGCATAAAGTTCCAAGTGATCGCCGTGTGCTT 2813
Query 2622 CTCATTGCT-TTGATCTTGCATGCACTAGGATACATAATCACCCTGATTCGACATCCCGC 2680
||| ||| | ||||| || || |||||||||||||| || | |||||||||||||| ||
Sbjct 2814 CTCGTTG-TCTTGATATTACACGCACTAGGATACATTGTCGCGCTGATTCGACATCCGGC 2872
Query 2681 AAGAGCAGATAGATTAGTTGTTGGAAGTTACGGATCTGCTGCTTCAAATTGGTGGCAAAC 2740
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2873 AAGAGCAGATAGATTAGTTGGTGGAAGTTACGGATCTAATGCTTCAAATTGGTGGCAAAC 2932
Query 2741 TGAAACAGAGGAGTATATTGGTTTGGTTCAAGATTTCTTCTTGCTTCCTCAGGTTATTGC 2800
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2933 TGAAACAGAGGAGTATATTGGTTTAGTTCAAGATTTCTTCTTGCTCCCTCAGGTTATTGC 2992
Query 2801 TAATGTTATGTGGCAGATCGATTCCCGGCAGCCACTAAGGAAGCTATATTACTTCGGGAT 2860
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2993 TAATGCTATGTGGCAGATTGATTCCCGGCAGCCACTAAGGAAGCTATATTACTTCGGGAT 3052
Query 2861 CACACTTGTCAGGCTTTTCCCGCACACTTATGACTACACT-GTTGGCTCTGTTCCTGATC 2919
|||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||||
Sbjct 3053 CACACTTGTCAGACTTTTCCCGCATGCCTATGACTACA-TCGTTGGCTCTGTTCCTGATC 3111
Query 2920 CTTACTTCATCGGAGAAGAACATGAGTTTGTTAATCCGAATTTCGACTTCTTCTCTAAGT 2979
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3112 CTTACTTCATTGGAGAAGAACATGAGTTTGTTAATCCGAATTTCGACTTCTTCTCTAAGT 3171
Query 2980 TTGGAGATATCGCGATACCTGTTACCGCGATTCTACTTTCTGTCATTGTGTTTGTTCAGC 3039
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3172 TTGGAGATATCGCCATACCTGTTACCGCGATTCTACTTGCTGTCATTGTGTTTGTTCAGC 3231
Query 3040 AGAGATGGGACTATGACAAGCTTTCACAAGCTTTATCCTTTGGACGGTTTAGGATTCTCC 3099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3232 AGAGATGGGACTATGACAAGCTTTCACAAGCTTTATCCTTTGGACGGTTTAGGATTCTCC 3291
Query 3100 CTTCTCGTTCTGTTAAGTACGAGAGAGTCATGTCTGAATCCGAAATGGTTTCTGGAGTCG 3159
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
Sbjct 3292 CTTCTCGTTCTGTTAAGTACGAGAGAGTAATGTCCGAATCCGAAATGGTTTCGGGAGCCC 3351
Query 3160 GTGTCAATGGAAATCGCAGTGATGATGAATGATTTTGTACTCGATTTTGTGTATT 3214
||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct 3352 GTGTCAATGGAAATCGCGGTGATGAAGAATGATTTT-TACTCGATTTTGTGTATT 3405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159882047341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5