BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923812 Length=756 Score E Sequences producing significant alignments: (Bits) Value AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 669 0.0 AT3G43200.1 | Symbols: | pseudogene, hypothetical protein, pre... 152 4e-36 > AT1G51670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48180.1); Has 37 Blast hits to 37 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749 FORWARD LENGTH=960 Length=960 Score = 669 bits (362), Expect = 0.0 Identities = 557/646 (86%), Gaps = 33/646 (5%) Strand=Plus/Plus Query 23 ATGGCACTCCCTCCCTATGATCCCAATTTCACAATGGCATCCACAAT-C-GTCGGACGCG 80 ||||||||||||||||||||||| ||||||||| |||| | | || | || |||||| Sbjct 19 ATGGCACTCCCTCCCTATGATCCGAATTTCACATTGGCTTTTTC-ATACGGT-AGACGCG 76 Query 81 --CA-GACATCGACTTTGACCAAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 137 | | | | || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 77 ATAATGTCTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG 136 Query 138 TTAATCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCACAATGAGTACT 197 || | ||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 137 TTGAGCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCGCACTGAGTACT 196 Query 198 CAGCTCCGTATTTGGTGGACAAAGCTGG-TGGCTCAAAC--A-----AT-CGCAAGCTCA 248 |||||| ||||||||||||||||||||| | | ||| | | | |||||||||| Sbjct 197 CAGCTCAGTATTTGGTGGACAAAGCTGGCTCACGCAACCTCAGGCGCAGGCGCAAGCTCA 256 Query 249 CTGTGAAAGACTGTCTTACCTTTGCCTTAAAGAAAGGCGGCATACCAAAAGCAGAAGATT 308 |||| || ||||| |||| |||||| |||||||||||||||||||| | ||||||||||| Sbjct 257 CTGTCAAGGACTGCCTTAACTTTGCGTTAAAGAAAGGCGGCATACCGAGAGCAGAAGATT 316 Query 309 GGATACCCTTGGGATCTGAGTCAAAGCCCCCACCATCGTATAAACCTGCTCTCGTTTCCA 368 || ||| |||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 317 GGCCACCTTTGGGATCTGAGTCAAAGACCCCATCATCGTACGAACCTGCTCTCGTTTCCA 376 Query 369 TGAAAGG-GAAAGTGATTGAGCCTAAGGATATGGAGGAAGTACGTGAGTTGTTGGTGCAT 427 ||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 377 TGAAAGGAGAA-GTGATTGAGCCTAAGGATATGGACGAAGTACCTGAGTTGTTGGTGCAT 435 Query 428 CAACC-G--GTGGGAGCAAAACTGCATGTGTTCACACCACACATTGAACTTCAACAAGAC 484 ||| | | |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 436 CAATCAGCCGTGGGAGCAAAACTGCATGTGTTCACTCCACACATTGAACTTCAACAAGAC 495 Query 485 GCGATTTACTGTGGCC-CGTCAGGTGAGCCAGG-GAGCTATGTTGGACTTAGAGATGGGA 542 || ||||||| || || ||||||||||| | | | |||| ||||||||||||||||||| Sbjct 496 GCAATTTACT-TG-CCTCGTCAGGTGAGT-ATGCGCGCTACGTTGGACTTAGAGATGGGA 552 Query 543 TCA-TAGTTGGAACGGAGAAGTTTCAAGGAAAGCCCATGGCAACAGTGAAGGTGTGGTAC 601 | | |||||||||| |||||| | ||||||||| ||||||||| ||||||||| |||||| Sbjct 553 T-AGTAGTTGGAACAGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTATGGTAC 611 Query 602 AAGAAG---TTTAG-ATTTCTCAAAGTGGCTTTGAGCAGGATGTTT 643 |||||| ||| | | || |||||||||||||||||||||||||| Sbjct 612 AAGAAGAAGTTT-GTAGTTGTCAAAGTGGCTTTGAGCAGGATGTTT 656 > AT3G43200.1 | Symbols: | pseudogene, hypothetical protein, predicted proteins, Arabidopsis thaliana | chr3:15185766-15186590 REVERSE LENGTH=825 Length=825 Score = 152 bits (82), Expect = 4e-36 Identities = 203/256 (79%), Gaps = 29/256 (11%) Strand=Plus/Plus Query 496 TGG-CCCGTCAGGTGAGCCAGGGAGCTATGTTGGACTTAGAGATGGGATCATAGTTGGAA 554 ||| ||| || |||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 570 TGGTCCC-TCTGGTGAGCCAGCCAGCTATGTTGGACTTAGAGATGGGATCATTGTTA-AA 627 Query 555 CG--GAGAAGTTTCAAGGAAAGCCCAT-GGCAACAGTGAAGGTGTGGTACAAGAAG---T 608 | |||||| ||||| ||||| |||| || |||||||||| | |||||||||||| | Sbjct 628 -GTTGAGAAGATTCAAAGAAAGACCATTGG-AACAGTGAAGATATGGTACAAGAAGAAGT 685 Query 609 TTAG-ATTTCTCAAAGTGGCTTTGAGC-AGGATGTTTGT-C-CA-CTA-CAA--TCAGGG 660 || | |||||||||||||||| || || |||| ||||| | | || || ||||| Sbjct 686 TT-GTATTTCTCAAAGTGGCTATG-GCCAGGAGGTTTGCACGCTTCTCTCAGCCTCAGGA 743 Query 661 CATAG--CCAT--AGA--GCCGGACGTAGGGCCAACACTT-CTGCTTCTTGACTTTTGTG 713 ||||| ||| | | ||||||| | |||||| || || |||||| |||||||||||| Sbjct 744 CATAGGACCAGGCACACAGCCGGACTTCGGGCCATCA-TTGCTGCTTGTTGACTTTTGTG 802 Query 714 TCCCACGCCTATCCAT 729 ||||||| |||||||| Sbjct 803 TCCCACGTCTATCCAT 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36721161457 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5