BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923812

Length=756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51670.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   669    0.0  
  AT3G43200.1 | Symbols:  | pseudogene, hypothetical protein, pre...   152    4e-36


> AT1G51670.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G48180.1); 
Has 37 Blast hits to 37 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19156504-19158749 
FORWARD LENGTH=960
Length=960

 Score =  669 bits (362),  Expect = 0.0
 Identities = 557/646 (86%), Gaps = 33/646 (5%)
 Strand=Plus/Plus

Query  23   ATGGCACTCCCTCCCTATGATCCCAATTTCACAATGGCATCCACAAT-C-GTCGGACGCG  80
            ||||||||||||||||||||||| ||||||||| |||| |   | || | ||  ||||||
Sbjct  19   ATGGCACTCCCTCCCTATGATCCGAATTTCACATTGGCTTTTTC-ATACGGT-AGACGCG  76

Query  81   --CA-GACATCGACTTTGACCAAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG  137
               | | | | ||   ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  77   ATAATGTCTTTGAGAATGACCCAGAGCACGATGAATCTGCTTCTGCTGCTATCGTAGCGG  136

Query  138  TTAATCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCACAATGAGTACT  197
            || | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  137  TTGAGCTGATAAGCTCTGCACGGCTTGCACTTAAGCTGGATAGTGTCCGCACTGAGTACT  196

Query  198  CAGCTCCGTATTTGGTGGACAAAGCTGG-TGGCTCAAAC--A-----AT-CGCAAGCTCA  248
            |||||| ||||||||||||||||||||| |  | ||| |  |     |  ||||||||||
Sbjct  197  CAGCTCAGTATTTGGTGGACAAAGCTGGCTCACGCAACCTCAGGCGCAGGCGCAAGCTCA  256

Query  249  CTGTGAAAGACTGTCTTACCTTTGCCTTAAAGAAAGGCGGCATACCAAAAGCAGAAGATT  308
            |||| || ||||| |||| |||||| |||||||||||||||||||| | |||||||||||
Sbjct  257  CTGTCAAGGACTGCCTTAACTTTGCGTTAAAGAAAGGCGGCATACCGAGAGCAGAAGATT  316

Query  309  GGATACCCTTGGGATCTGAGTCAAAGCCCCCACCATCGTATAAACCTGCTCTCGTTTCCA  368
            ||  ||| |||||||||||||||||| ||||| |||||||  ||||||||||||||||||
Sbjct  317  GGCCACCTTTGGGATCTGAGTCAAAGACCCCATCATCGTACGAACCTGCTCTCGTTTCCA  376

Query  369  TGAAAGG-GAAAGTGATTGAGCCTAAGGATATGGAGGAAGTACGTGAGTTGTTGGTGCAT  427
            ||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct  377  TGAAAGGAGAA-GTGATTGAGCCTAAGGATATGGACGAAGTACCTGAGTTGTTGGTGCAT  435

Query  428  CAACC-G--GTGGGAGCAAAACTGCATGTGTTCACACCACACATTGAACTTCAACAAGAC  484
            ||| | |  |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  436  CAATCAGCCGTGGGAGCAAAACTGCATGTGTTCACTCCACACATTGAACTTCAACAAGAC  495

Query  485  GCGATTTACTGTGGCC-CGTCAGGTGAGCCAGG-GAGCTATGTTGGACTTAGAGATGGGA  542
            || ||||||| || || |||||||||||  | | | |||| |||||||||||||||||||
Sbjct  496  GCAATTTACT-TG-CCTCGTCAGGTGAGT-ATGCGCGCTACGTTGGACTTAGAGATGGGA  552

Query  543  TCA-TAGTTGGAACGGAGAAGTTTCAAGGAAAGCCCATGGCAACAGTGAAGGTGTGGTAC  601
            | | |||||||||| |||||| | ||||||||| ||||||||| ||||||||| ||||||
Sbjct  553  T-AGTAGTTGGAACAGAGAAGATCCAAGGAAAGTCCATGGCAATAGTGAAGGTATGGTAC  611

Query  602  AAGAAG---TTTAG-ATTTCTCAAAGTGGCTTTGAGCAGGATGTTT  643
            ||||||   ||| | | || ||||||||||||||||||||||||||
Sbjct  612  AAGAAGAAGTTT-GTAGTTGTCAAAGTGGCTTTGAGCAGGATGTTT  656


> AT3G43200.1 | Symbols:  | pseudogene, hypothetical protein, predicted 
proteins, Arabidopsis thaliana | chr3:15185766-15186590 
REVERSE LENGTH=825
Length=825

 Score =  152 bits (82),  Expect = 4e-36
 Identities = 203/256 (79%), Gaps = 29/256 (11%)
 Strand=Plus/Plus

Query  496  TGG-CCCGTCAGGTGAGCCAGGGAGCTATGTTGGACTTAGAGATGGGATCATAGTTGGAA  554
            ||| ||| || ||||||||||  ||||||||||||||||||||||||||||| |||  ||
Sbjct  570  TGGTCCC-TCTGGTGAGCCAGCCAGCTATGTTGGACTTAGAGATGGGATCATTGTTA-AA  627

Query  555  CG--GAGAAGTTTCAAGGAAAGCCCAT-GGCAACAGTGAAGGTGTGGTACAAGAAG---T  608
             |  |||||| ||||| ||||| |||| || |||||||||| | ||||||||||||   |
Sbjct  628  -GTTGAGAAGATTCAAAGAAAGACCATTGG-AACAGTGAAGATATGGTACAAGAAGAAGT  685

Query  609  TTAG-ATTTCTCAAAGTGGCTTTGAGC-AGGATGTTTGT-C-CA-CTA-CAA--TCAGGG  660
            || | |||||||||||||||| || || |||| |||||  | |  ||  ||   ||||| 
Sbjct  686  TT-GTATTTCTCAAAGTGGCTATG-GCCAGGAGGTTTGCACGCTTCTCTCAGCCTCAGGA  743

Query  661  CATAG--CCAT--AGA--GCCGGACGTAGGGCCAACACTT-CTGCTTCTTGACTTTTGTG  713
            |||||  |||   | |  ||||||| | |||||| || || |||||| ||||||||||||
Sbjct  744  CATAGGACCAGGCACACAGCCGGACTTCGGGCCATCA-TTGCTGCTTGTTGACTTTTGTG  802

Query  714  TCCCACGCCTATCCAT  729
            ||||||| ||||||||
Sbjct  803  TCCCACGTCTATCCAT  818



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36721161457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5