BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923815 Length=278 Score E Sequences producing significant alignments: (Bits) Value AT1G52825.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 353 4e-97 AT4G14615.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 244 2e-64 > AT1G52825.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14615.1); Has 52 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:19670489-19670967 REVERSE LENGTH=479 Length=479 Score = 353 bits (191), Expect = 4e-97 Identities = 242/266 (91%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 5 TTGGAGTCTCTTACAAATGTCGTCAGTAGGAACATCAAAGGGGATTCTTGAAATCGCCAA 64 |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 58 TTGGAGTCTCATACAAATGTCATCAGTAGGAACATCAAAGGGGATTCTAGAAATCGCCAA 117 Query 65 ATTCGGTGTATACGTCGCTGTTCCGATCGTCCTAATGTATACATTCGCCAACAACAGCAC 124 |||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| Sbjct 118 ATTCGGTGTATACGTCGCAGTACCAATCGTCCTAATCTATACATTCGCCAACAACAGCAC 177 Query 125 CAATATCAAGAAATTCATGGGCAATCATTCATACGTTGTTTATCCTAAAGAAGCTCCTCG 184 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 CAACATCAAGAAATTCATGGGCAATCATTCATACGTTGTTTATCCTAAAGAAGCTCCTCG 237 Query 185 TCCTCCTTCGCCTGAAGAGCTACGAGAGATGGCTAAAGAAATTGCTCGCAACAAGAACA- 243 ||||||||| |||||||||||||| |||||||||||| || |||| | ||| || || | Sbjct 238 TCCTCCTTCACCTGAAGAGCTACGTGAGATGGCTAAACAACTTGCCCTCAAAAAAAAAAA 297 Query 244 ---TCCCTTCAAATTGATTCTACTTG 266 ||||||| ||||||| ||| ||| Sbjct 298 AAATCCCTTCTAATTGAT-CTA-TTG 321 > AT4G14615.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8383764-8385079 FORWARD LENGTH=574 Length=574 Score = 244 bits (132), Expect = 2e-64 Identities = 198/230 (86%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 19 AAATGTCGTCAGTAGGAACATC-AAAGGGGATTCTTGAAATCGCCAAATTCGGTGTATAC 77 ||||||| || || |||||||| ||||||| |||| || |||| ||| |||||||| || Sbjct 77 AAATGTCATCTGTTGGAACATCGAAAGGGG-TTCTGGAGATCGTCAAGTTCGGTGTCTAT 135 Query 78 GTCGCTGTTCCGATCGTCCTAATGTATACATTCGCCAACAACAGCACCAATATCAAGAAA 137 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 136 GTCGCTGTTCCGATCGTCCTTATGTACACATTCGCCAACAACAGCACCAATATCAAGAAA 195 Query 138 TTCATGGGCAATCATTCATACGTTGTTTATCCTAAAGAAGCTCCTCGTCCTCCTTCGCCT 197 ||||||||||||| |||||| |||||||||||| |||| || ||| | |||||||| || Sbjct 196 TTCATGGGCAATCGTTCATATGTTGTTTATCCTGAAGAGGCACCTAGACCTCCTTCACCC 255 Query 198 GAAGAGCTACGAGAGATGGCTAA-AGAAATTGCTCGCAACAAGAACATCC 246 || |||||| |||||||||| | ||| |||| || || |||||||||| Sbjct 256 GATGAGCTAAGAGAGATGGC-ACGAGAGCTTGCCCGTAAGAAGAACATCC 304 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12768008246 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5