BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923818

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52855.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   427    2e-119


> AT1G52855.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G15534.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr1:19682946-19683498 REVERSE LENGTH=553
Length=553

 Score =  427 bits (231),  Expect = 2e-119
 Identities = 243/249 (98%), Gaps = 0/249 (0%)
 Strand=Plus/Plus

Query  3    GAGTTTTCTTCTTAAAGAAGATATGGTTTGTTTCTGTTTCTTGGTTGATCAGACAAGGAA  62
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134  GAGTTTTCTTCTTGAAGAAGATATGGTTTGTTTCTGTTTCTTGGTTGATCAGACAAGGAA  193

Query  63   AGTGAAACGAAGCAAACCGGCGGCTGGAACTTGCTCACGGTGTGGCCATTGTGCGAGCAT  122
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  194  AGTGAAACGGAGCAAACCGGCGGCTGGAACTTGCTCACGGTGTGGCCATTGTGCGAGCAT  253

Query  123  CGCCGACATGAAGACTTCAACAAGATTCTGTTTCATTCCTATTTATTGGAGATCTTGGAG  182
            |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  254  CGCCGACATGAAGACTTCGACTAGATTCTGTTTCATTCCTATTTATTGGAGATCTTGGAG  313

Query  183  AGCTGTTGTTTGCAGTTTCTGTGGTTCTGTTCTTAAGTCTTATCGTTGAATCAGATTTTC  242
            |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct  314  AGCTGTTGTTTGCAGTTTCTGTGGCTCTGTTCTTAAGTCTTATCGTTGAACCAGATTTTC  373

Query  243  CAAATTTAA  251
            |||||||||
Sbjct  374  CAAATTTAA  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11410779023


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5