BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923832
Length=490
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52970.1 | Symbols: DD11 | downregulated in DIF1 11 | chr1:1... 651 0.0
> AT1G52970.1 | Symbols: DD11 | downregulated in DIF1 11 | chr1:19736634-19737083
REVERSE LENGTH=450
Length=450
Score = 651 bits (352), Expect = 0.0
Identities = 420/452 (93%), Gaps = 7/452 (2%)
Strand=Plus/Plus
Query 24 ATGGAGAAAGCAATTCTCATAACGTTTCTCATAGCCAC-A--TCAATGGTTTATCAAAGT 80
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
Sbjct 1 ATGGAGAAAGCAATTCTCATAACGTTTCTCATAGCCACCACATCGATGGTTTATCAAACT 60
Query 81 CTCGCTCAAGACGAAGAGATCAGTCCAATATCTCCTGAATCATTTGCATACGAACCCGCT 140
| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATTGGTCAAGAAGAAGAGATCAGTCCAATATCTCCTGAATCATTGGCATACGAACCCGCT 120
Query 141 GCAGCTTACGAGTATGACCACGACCTCCTA-GACCACATGACGACACAACGCATCAAATT 199
|||||||||||||| |||||||| |||||| | |||||||||||| | |||||||||||
Sbjct 121 GCAGCTTACGAGTACGACCACGAACTCCTAAG-CCACATGACGACCCGGCGCATCAAATT 179
Query 200 TCTTCAAGATTGTTCGGATAAAATGAGCTCGAAATGCGGGGTTGAGATGACGGAAGGATT 259
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TCTCCAAGATTGTTCGGATAAAATGAGCTCGAAATGCAATGTTGAGATGACGGAAGGATT 239
Query 260 GATCGACGACAAGCCCGTGTCGGAGAATTGTTGTGTGAACTTTTTGAAGATTGGAAGAGA 319
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 GATCGACGACAAGCCCGTTTCGGAGGATTGTTGTGTGAACTTTTTGAAGATTGGAAGAGA 299
Query 320 TTGTCACGAAGGATT-ATTGACTTTTGTATTCGCCACTTATGAGCTAAAAGATGCTGCTT 378
|||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 300 ATGTCACGAAGGATTGAT-GACTTTTGTGTTCGCCACTTATGAGCTAAAAGATGTTGCTT 358
Query 379 CTGAGATTCTTCCTAGGAGCAAACGGATGTGGAACAAATGTGTTGAGACCACTGCTGCTA 438
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 CTGCGATTCTTCCTAGGAGCAAACGGATGTGGAATAAATGTGTTGAGACCACTGCTGCTA 418
Query 439 AGATTGGTGTTCCTCTCGCATTTGAAACTTGA 470
||||||||| ||||||||| ||||||||||||
Sbjct 419 AGATTGGTGCTCCTCTCGCTTTTGAAACTTGA 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23358878355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5