BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923833
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03570.1 | Symbols: | Protein of unknown function (DUF3550/... 1378 0.0
> AT3G03570.1 | Symbols: | Protein of unknown function (DUF3550/UPF0682)
| chr3:856876-860469 FORWARD LENGTH=2325
Length=2325
Score = 1378 bits (746), Expect = 0.0
Identities = 807/836 (97%), Gaps = 5/836 (1%)
Strand=Plus/Plus
Query 352 AATATTGCAAACAAACAGCTACGGTTTCTTGCAAGGTTTCTTATGGTGTGTTTGGTCCTT 411
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 513 AATATTGCAAACAAGCAGCTTCGGTTTCTTGCAAGGTTTCTTATGGTGTGTTTGGTTCTT 572
Query 412 GGCCGCCGTGAGATGGTGCATCAACTTGTTGATCAGTTTAAACGGTTGATAGATGAATGC 471
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 573 GGCCGCCGTGAGATGGTGCATCAACTCGTTGATCAGTTTAAACGGTTGATTGATGAATGC 632
Query 472 AAGAGGACATTCCAGGAAACCGATTTTAAAGAATGGAAGGTTGTGGCGCAGGACATAGTT 531
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 633 AAGAGGACATTCCAGGAAACCGATTTTAAGGAATGGAAGGTGGTGGCGCAGGAAATAGTT 692
Query 532 AGATTTCTGAAATCTGACACTGCATTTATGAACATTAGACCTCTAAGATACAGTCTTGT- 590
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 693 AGATTTCTGAAATCGGACACTGCATTCATGAACATTAGACCTCTAAGATACAGTCTTGTA 752
Query 591 TCTGGATCCTAATCTGGATGCTGGTACACCGCGTGCTAGTAGATCTTTAAGGTTGACGGA 650
| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 753 T-TGGATCCTAATCTGGATGCTGGTACTCCGCGTGCAAGTAGGTCTTTAAGGTTGACGGA 811
Query 651 TGCAATCTTGAGCAGCTATTATC-ATAACGAGGTCAAGTATTCGGAGCTCACGCTCGATT 709
||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 812 TGCTATCTTGAGCAGTTATTA-CTGTAACGAGGTCAAGTATTCGGAGCTCACGCTCGATT 870
Query 710 CTTTTAGGATGCTTCAATGCTTAGAGTGGGAACCGAGTGGTTCACTATATCAATCAACTG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CTTTTAGGATGCTTCAATGCTTAGAGTGGGAACCGAGTGGTTCACTATATCAATCAACTG 930
Query 770 GTGCTAAAATGGGTCAGAATGCTCCCGTTGGAGTTTCTCGTATTAACTCCCAGAGCATGA 829
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 931 GTGCTAAAATGGGTCAGAATGCTCCCGTTGGAGTTGCTCGTATTAACTCCCAGAGCATGA 990
Query 830 ATGATCCTACTTTGCCACCTAACCCTCGCAAAGCTGTCCTTTATCGTCCATCCATAACAC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ATGATCCTACTTTGCCACCTAACCCTCGCAAAGCTGTCCTTTATCGTCCATCCATAACAC 1050
Query 890 ATTTTTTGGCTGTTTTGGCCACTATTTGTGAGGAGCTTCCTTCTCATGGCATTCTTTTAT 949
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1051 ATTTTTTGGCTGTTTTGGCCACCATTTGTGAGGAGCTTCCTTCTCATGGCATTCTTTTAT 1110
Query 950 TATATCTGTCTGCTTCTGGCAAGAATGGACAGATTTCATCATCTCCTTTGAGTGCTAGAA 1009
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1111 TATATCTGTCTGCTTCTGGCAAGATTGGACAGATTTCATCATCTCCCTTGAGTGCTAGAA 1170
Query 1010 GTGCAACCAATGTTGAGGAGAATATCTTGAGAGACTTTGAATCTCACACAATCAAACAAG 1069
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GTGCAACCAGTGTTGAGGAGAATATCTTGAGAGACTTTGAATCTCACACAATCAAACAAG 1230
Query 1070 AGAGAGACCCATCACTTCAAATTACGCCATCTGGTCAGTCTTTGAGGCAAATCAGTGAGG 1129
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AGACAGAACCATCACTTCAAATTACGCCATCTGGTCAGTCTTTGAGGCAAATCAGTGAGG 1290
Query 1130 ACGCAGTCAGTACCCCATGTGGTCTGTCTTTTGGCAGTCATGGGCTCACAGGTATC 1185
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1291 ACGCAGTCAGTACCCCATGTGGTTTGTCTTTTGGCAGTCATGGGCTCACAGG-ATC 1345
Score = 542 bits (293), Expect = 4e-153
Identities = 331/349 (95%), Gaps = 3/349 (1%)
Strand=Plus/Plus
Query 1 GCTTTCGTCGTGACCTGAGAAATGTCGCAGCAAATCAGCGG---TAATAATATCCCGCTG 57
|||||||| | ||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 117 GCTTTCGTGGCGACCTCAAAAATGTCGCAGCAAATCAGCGGTAATAATAATATCCCGCTG 176
Query 58 AGTGAAGTTTACTGGTCTCTTGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGAC 117
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGTGAAGTTTACTGGTCTCTCGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGAC 236
Query 118 TTGCCCTTCTATGAACGCTCCAGGTATGAAAACTATTTCTTCAAGGTATTCAAAGTATAC 177
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 TTGCCCTTCTATGAACGCTCCAGGTATGAGAACTATTTCTTCAAGGTATTCAAAGTATAC 296
Query 178 ACACAGTTATGGAAGTTTCAGCAAGAGAATCGGCAGAAGCTTGTTGAAGCTGGACTTAAG 237
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 ACACAACTATGGAAGTTTCAGCAAGAGAATAGGCAGAAGCTTGTTGAAGCTGGACTTAAG 356
Query 238 AGATGGGAGATTGGAGAGATCGCATCTCGAATTGCACAGCTTTACTATGGACATTATATG 297
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 357 AGATGGGAGATTGGAGAGATCGCTTCTCGCATTGCCCAGCTTTACTATGGACATTATATG 416
Query 298 CGGACAAGTGATGCCGGTTACTTATCCGAGTCTTATGTATTCTACGAAG 346
|| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 417 CGAACAAGTGATGCTGGTTACTTATCCGAGTCCTATGTATTCTACGAAG 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5