BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923838
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53020.1 | Symbols: UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATI... 651 0.0
AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family p... 542 3e-153
AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family p... 130 2e-29
> AT1G53020.1 | Symbols: UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATING
ENZYME 26); ubiquitin-protein ligase | chr1:19751372-19753064
REVERSE LENGTH=1182
Length=1182
Score = 651 bits (352), Expect = 0.0
Identities = 510/585 (87%), Gaps = 16/585 (3%)
Strand=Plus/Plus
Query 143 ACCATGACGGTCTCTTCTTTTTCGAAATTCAGTTCCCAGATACCTATCCTTCAGTGCCAC 202
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 494 ACCATGACGGTCTTTTCTTTTTCGATATTCAGTTCCCAGATACCTATCCTTCAGTGCCAC 553
Query 203 CAAAAGTTCATTACCATTCGGGCGGGCTTAGAATCAACCCGAATTTATACAAATGTGGTA 262
|||| ||| |||||||||| || ||||||||||||||||||||| ||||||| |||||||
Sbjct 554 CAAATGTTTATTACCATTCCGGTGGGCTTAGAATCAACCCGAATCTATACAACTGTGGTA 613
Query 263 AAGTATGCTTGAGTCTTATCCGTACCTGG-ACCGGTAAAACGAGGGAGAAA-TGGCTCCC 320
| ||||||||||||||| || |||||||| | ||||| ||||| | || ||||||||
Sbjct 614 AGGTATGCTTGAGTCTTCTCGGTACCTGGCAT-GGTAACGCGAGGCA-AAGCTGGCTCCC 671
Query 321 CAAGGAGTCCACAATGTTGCAGCTTCTTGTCTCAATCCAAGCACTAATCTTGAATGAAAA 380
||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||| |
Sbjct 672 AAAGGAGTCCACAATGTTACAGGTTCTTGTCTCAATACAAGCACTTGTCTTGAATGAACA 731
Query 381 ACCATATTTTAACGAACCTGGCTACGAGCA--ATCCATAGGG-ACTCCATCAGGCGAGTC 437
|||||| ||||||||||||||||||| || ||| | |||| ||| | |||||||||
Sbjct 732 ACCATACTTTAACGAACCTGGCTACG-GCCTGATC-A-AGGGGACTTGGTTAGGCGAGTC 788
Query 438 TTTTTCCAAAGCTTACAGTGAGAACGTATTTCTATTTTCGTTAAAGGCTATGGTTTACAG 497
|| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 789 CAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTTAAAGACTATGGTTTACAG 848
Query 498 CATGAGAAAACCACCCGAGCATTTTGAAGAGTTTGTTCGTTGCCATTTCTTCGTCCGGTC 557
|||||||||||||||| ||||||||||||||| ||||| ||||| ||| ||||||||
Sbjct 849 CATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTACTTTGTCCGGTC 908
Query 558 TCACGACATAGTGAAAGCGTGCAATGCTTATAAAAATGGAGCTTCTG-TTGGATCAATGG 616
||||||||| |||||||| ||||||||||||||| ||| ||| | | ||||||| ||||
Sbjct 909 TCACGACATCGTGAAAGCATGCAATGCTTATAAAGCTGGCGCTCC-GCTTGGATCGATGG 967
Query 617 TTAAAG-ATGGAGTCAAAGACCCTGCAAAAA-CTAGACAGAGCGGCTCCAAGACGTTTAG 674
|||||| | |||||| |||||| || || || ||||||||||||||||||||| |||||
Sbjct 968 TTAAAGGA-GGAGTCCAAGACCTTG-AACAAGCTAGACAGAGCGGCTCCAAGAAGTTTAA 1025
Query 675 GACCAATGTAGCTAGCTTTATGAAGACAGTGGTTGATGAATTCGT 719
|||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1026 GACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGT 1070
Score = 134 bits (72), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1 TTTGTCAGAGCTTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAG 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TTTGTCAGAGCCTGCGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAG 483
Query 61 GGAACTCCTTACCATGAC 78
||||||||||||||||||
Sbjct 484 GGAACTCCTTACCATGAC 501
> AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family
protein | chr1:19754214-19755843 REVERSE LENGTH=951
Length=951
Score = 542 bits (293), Expect = 3e-153
Identities = 330/348 (95%), Gaps = 2/348 (1%)
Strand=Plus/Plus
Query 143 ACCATGACGGTCTCTTCTTTTTCGAAATTCAGTTCCCAGATACCTATCCTTCAGTGCCAC 202
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 302 ACCATGACGGTCTCTTCTTTTTCGATATTCAGTTCCCAGATACCTATCCTTCAGTGCCAC 361
Query 203 CAAAAGTTCATTACCATTCGGGCGGGCTTAGAATCAACCCGAATTTATACAAATGTGGTA 262
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 362 CAAAAGTTCATTACCATTCGGGCGGGCTTAGAATCAACCCGAATCTATACAAATGTGGTA 421
Query 263 AAGTATGCTTGAGTCTTATCCGTACCTGGACCGGTAAAACGAGGGAGAAATGGCTCCCCA 322
|||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 422 AAGTGTGCTTGAGTCTTATCAGTACCTGGACCGGTAAAAAGAGGGAGAAATGGCTCCCCA 481
Query 323 AGGAGTCCACAATGTTGCAGCTTCTTGTCTCAATCCAAGCACTAATCTTGAATGAAAAAC 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AGGAGTCCACAATGTTGCAGCTTCTTGTCTCAATCCAAGCACTAATCTTGAATGAAAAAC 541
Query 383 CATATTTTAACGAACCTGGCTACGAGCAATCCATAGGGACTCCATCAGGCGAGTCTTTTT 442
|||||| |||||| |||||||||||| ||||||| |||||||||| ||||||||| | ||
Sbjct 542 CATATTATAACGAGCCTGGCTACGAGAAATCCATGGGGACTCCATTAGGCGAGTCCTATT 601
Query 443 CCAAAGCTTACAGTGAGAACGTATTTC-TATTTTCGTTAAAGGCTATG 489
| |||| ||| |||||||||||||| | |||||||||||||| |||||
Sbjct 602 CTAAAGATTATAGTGAGAACGTATT-CGTATTTTCGTTAAAGACTATG 648
Score = 302 bits (163), Expect = 5e-81
Identities = 217/242 (90%), Gaps = 8/242 (3%)
Strand=Plus/Plus
Query 516 GCATTTTGAAGAGTTTGTTCGTTGCCATTTCTTCGTCCGGTCTCACGACATAGTGAAAGC 575
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 648 GCATTTTGAAGAGTTTGTTCGTAGCCATTTCTTCGTCCGGTCTCACGACATAGTGAAAGC 707
Query 576 GTGCAATGCTTATAAAAATGGAGCTTCTGTTGGATCAATGGTTAAAGATGGAGTCAAAGA 635
|||||||||||||||| |||||||| ||||||||||||| | ||||| ||||||||| |
Sbjct 708 GTGCAATGCTTATAAAGATGGAGCTCCTGTTGGATCAATAGATAAAGGCGGAGTCAAAAA 767
Query 636 CCCTGCAAAAACTAGACAGA-GCGGCTCCAAGACGTTTAGGACCAATGTAGCTAGCTTTA 694
| ||| ||||||| | | ||||| || |||||||| ||||||| |||||||||
Sbjct 768 AC----AAA--CTAGACA-ACGAGGCTCTTTGAAGTTTAGGATCAATGTAACTAGCTTTA 820
Query 695 TGAAGACAGTGGTTGATGAATTCGTCGACTTAGGAGCAATAAGAGAAGCAAATCATAGAG 754
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 821 TGAAGACAGTGGTTGATGAATTCGTCAACTTAGGAGCAATAAGAGAAGCAAATCATAGAG 880
Query 755 GT 756
||
Sbjct 881 GT 882
Score = 134 bits (72), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1 TTTGTCAGAGCTTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAG 60
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 232 TTTGTCAGAGCATGTGAATCAAGAATTGATCTTTTGAGAGCTGTAATTATTGGAGCCGAG 291
Query 61 GGAACTCCTTACCATGAC 78
||||||||||||||||||
Sbjct 292 GGAACTCCTTACCATGAC 309
> AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family
protein | chr1:19756824-19759623 REVERSE LENGTH=2029
Length=2029
Score = 130 bits (70), Expect = 2e-29
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 3 TGTCAGAGCTTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAGGG 62
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1025 TGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCTGAGGG 1084
Query 63 AACTCCTTACCATGAC 78
||||||||||||||||
Sbjct 1085 AACTCCTTACCATGAC 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5