BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923840
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family p... 2567 0.0
AT1G53020.1 | Symbols: UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATI... 1295 0.0
AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family p... 621 6e-177
> AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family
protein | chr1:19756824-19759623 REVERSE LENGTH=2029
Length=2029
Score = 2567 bits (1390), Expect = 0.0
Identities = 1591/1686 (94%), Gaps = 22/1686 (1%)
Strand=Plus/Plus
Query 1 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 189
Query 61 TCGCTTCGGGCTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TCGCTTCGGGTTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 249
Query 121 AAAATTATGAATTCCGGAATGTTGGTGGTCTTAATGGTGGTAACAATGTTGTTGATAAGA 180
||| |||||||||||| |||||||||| | |||| | | ||||||||||||||||||||
Sbjct 250 AAAGTTATGAATTCCGCAATGTTGGTGTTGTTAA--G-GATAACAATGTTGTTGATAAGA 306
Query 181 AGAACAAAGGGAAGGCAATACAAGTTGACTGCTTTTCTTACAACAACGTTCAATCTCATC 240
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 307 AGAACAAAGGGAAGGCAATACAAGTTGACTCCTTTTCTTTCAACAACGTTCAATCTCATC 366
Query 241 ATCCTGGATCTTCGCCGATTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 300
||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATCATGGATCGTCGCTGCTTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 426
Query 301 ACCCTTTTAGTCAATTTTCTAATCAACCAATTGATGTTGATGACTACACAATGTTTCAAG 360
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 427 TCCCTTTTAGTGAATTTGCTAATCAACCAATTGATGTTGATGACTACTCAATGTATCAAG 486
Query 361 ACGTTCTAGATCCTAAGAATGTCCCAGCCGGTGCAGAGGTGACGACAGTACCTTGGGGTT 420
||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||
Sbjct 487 ACGTTCTAGATCCTAAGGATGTTCCAGCTGGTGCAGAGGTGACG---GTACCTTGGGGTT 543
Query 421 TAAATTCGAGCAGTAAGGGAACAGCGAAATCAAGTAGAAGCAGTT-TGAGAAGTCAATCG 479
|||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||
Sbjct 544 TAAATTCGAGCAGTAAGGGAACTGCGAAATCAAGTATAAGCA-TTATGAGAAGTCAATCC 602
Query 480 ATGAAA-GAGTATGGAAC-CTCATCTCTGGCAACTACTCATGTTCCTCAATTATGGGATT 537
|||||| || |||||||| | |||||||||||| ||| |||||||||||||||||||||
Sbjct 603 ATGAAAGGA-TATGGAACAGT-ATCTCTGGCAACGACTAATGTTCCTCAATTATGGGATT 660
Query 538 ATTCTTTGCCTCAACAGAATCAGCCTATCTATTCTTCTGTATCGTTTTCTGTGGTTCAAC 597
|| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 661 ATACTTTGCCTCAGCAGAATCAGGCTATCTATTCTTCTGTATCGTTTTCTGCGGTTCAAC 720
Query 598 CTCAGACTCCTGATGTATTGATGGTC-CCGAATCCTACTCCAAACCCTTTTAGATT-TGA 655
||||||||||||||||| |||||||| || ||||||||||||||||||||||| || |||
Sbjct 721 CTCAGACTCCTGATGTAGTGATGGTCACC-AATCCTACTCCAAACCCTTTTAG-TTATGA 778
Query 656 TGCTTCTGCTAGTTCTTCTCGCCCTATAGCGGCTGGGCCTATTTCTTCAGTCCAGGATTC 715
|||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 779 TGCTTCTGCTAGTTCTTCTCATCCTATAGCGGCTGAGCCTATTTCTTCAGTTCAGGATTC 838
Query 716 TTCCAATGTC-AGGAAAATTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACTG 774
|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 839 TTCCAATG-CTAGGAAACTTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACCG 897
Query 775 TTGAGGATTTCTCAGATCATCACTATGCTTCTAAGGGTAAATCTTCAAAGCAGCACTCCA 834
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 898 TCGAGGATTTCTCAGATCATCACTATGCTTCAAAGGGTAAATCTTCAAAGCAGCACTCGA 957
Query 835 AGAATTGGGTGAAAAAGGTGCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 894
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGAATTGGGTGAAAAAGGTTCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 1017
Query 895 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 1077
Query 955 CCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACCT 1014
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1078 CTGAGGGAACTCCTTACCATGACGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACTT 1137
Query 1015 ATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCCGAATC 1074
|||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 1138 ATCCTTCAGTGCCACCGAATGTTCATTACCATTCTGGTGGGCTTAGAATCAACCCGAATC 1197
Query 1075 TATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCCGGCAGTGCTAGGG 1134
||||||||||||| |||||||||||||||||||||||||||||||| || || || ||||
Sbjct 1198 TATACAATTGTGGGAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCAGGTAGCGCGAGGG 1257
Query 1135 AGAAATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1194
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGAAATGGCTCCCAAATGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1317
Query 1195 TCTTGAATGAAAAACCATACTTTAACGAGCCTGGCTACGTACAGAGCATGGGGACTGCAT 1254
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1318 TCTTGAATGAAAAACCATACTTTAACGAACCTGGCTACGTACAGAGCGCGGGGACTGCAT 1377
Query 1255 CAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTTAAAGACTA 1314
||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1378 CAGGCGAGTCCAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTTAAAGACTA 1437
Query 1315 TGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTTCT 1374
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1438 TGGTTTACAGCATAAGAAGACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTACT 1497
Query 1375 TCGTCCGGTCTCACGACATTGTGAAAGCGTGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1434
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1498 TTGTCCGGTCTCACGACATTGTGAAAGCATGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1557
Query 1435 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAACAAGCTAGCCAGAGCGGCTCCAAGA 1494
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1558 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAAGAAGCTAGACAGAGCGGCTCCAAGA 1617
Query 1495 AGTTTAAGACCGATGTAGCTCGCTTTATGCAGACAGTTGTTGATGAATTCGTCAAACTAG 1554
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1618 AGTTTAAGACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGTCAAACTAG 1677
Query 1555 GAGTCAAGGAGCTTGCAGAAAAACCAAAACCACCTGA-GAGCAGTGCTAACACAGAGAAT 1613
|||||||||||||||||||||||||| |||| ||| | ||||| ||||||||||||||||
Sbjct 1678 GAGTCAAGGAGCTTGCAGAAAAACCAGAACCGCCT-ATGAGCAATGCTAACACAGAGAAT 1736
Query 1614 CAGAGCAATAAAACAAACC-GTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1672
|||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CAGAGCAAGAAAA-AAACCCGTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1795
Query 1673 ATGTTT 1678
||||||
Sbjct 1796 ATGTTT 1801
> AT1G53020.1 | Symbols: UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATING
ENZYME 26); ubiquitin-protein ligase | chr1:19751372-19753064
REVERSE LENGTH=1182
Length=1182
Score = 1295 bits (701), Expect = 0.0
Identities = 871/953 (91%), Gaps = 12/953 (1%)
Strand=Plus/Plus
Query 712 ATTCTTCCAATGTCAGGAAAATTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACA 771
||||||||| ||| | |||| ||||||||||||||||| | | |||||||||||||||
Sbjct 236 ATTCTTCCAGTGTTAAGAAACTTAAGGAAGAGTTTCTGCGCAACTTTAAAAGATTTGACT 295
Query 772 CTGTTGAGGATTTCTCAGATCATCACTATGCTTCTAAGGGTAAATCTTCAAAGCAGCACT 831
| |||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||
Sbjct 296 CCGTTGAGGATTTCTCAGATCATCACTATGTTTCTAAGGGGAAAGCGTCAAAGCAGCACT 355
Query 832 CCAAGAATTGGGTGAAAAAGGTGCAAGCA-GATTGGAAGATTCTTGAGAATG-ATTTGCC 889
| |||||||||||||||||||| |||| | || ||||| |||||| | | | |||||||
Sbjct 356 CGAAGAATTGGGTGAAAAAGGTTCAAG-ACGAGTGGAAAATTCTTAACCA-GAATTTGCC 413
Query 890 AGAGGCAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTAT 949
|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 AGAGACAATATTTGTCAGAGCCTGCGAATCAAGAATGGATCTTTTGAGAGCTGTAATTAT 473
Query 950 TGGAGCCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGA 1009
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 474 TGGAGCCGAGGGAACTCCTTACCATGACGGTCTTTTCTTTTTCGATATTCAGTTCCCAGA 533
Query 1010 TACCTATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCC 1069
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 534 TACCTATCCTTCAGTGCCACCAAATGTTTATTACCATTCCGGTGGGCTTAGAATCAACCC 593
Query 1070 GAATCTATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGC-CGGCAGTG 1128
|||||||||||| |||||||| ||||||||||||||||||||||||| ||| || | |
Sbjct 594 GAATCTATACAACTGTGGTAAGGTATGCTTGAGTCTTCTCGGTACCT-GGCATGGTAACG 652
Query 1129 CTAGGGAGAA-ATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAA 1187
| ||| | || ||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 653 CGAGGCA-AAGCTGGCTCCCAAAGGAGTCCACAATGTTACAGGTTCTTGTCTCAATACAA 711
Query 1188 GCACTCATCTTGAATGAAAAACCATACTTTAACGAGCCTGGCTACGTACAGAGCATGGGG 1247
||||| ||||||||||| |||||||||||||||| |||||||||| | || || ||||
Sbjct 712 GCACTTGTCTTGAATGAACAACCATACTTTAACGAACCTGGCTACGGCCTGATCAAGGGG 771
Query 1248 AC-TGCATCAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTT 1306
|| || | |||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 772 ACTTG-GTTAGGCGAGTCCAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTT 830
Query 1307 AAAGACTATGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAA 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AAAGACTATGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAA 890
Query 1367 CCATTTCTTCGTCCGGTCTCACGACATTGTGAAAGCGTGCAATGCTTATAAAGCTGGAGC 1426
||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 891 CCATTACTTTGTCCGGTCTCACGACATCGTGAAAGCATGCAATGCTTATAAAGCTGGCGC 950
Query 1427 TCCGCTTGGATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAACAAGCTAGCCAGAGCGG 1486
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 951 TCCGCTTGGATCGATGGTTAAAGGAGGAGTCCAAGACCTTGAACAAGCTAGACAGAGCGG 1010
Query 1487 CTCCAAGAAGTTTAAGACCGATGTAGCTCGCTTTATGCAGACAGTTGTTGATGAATTCGT 1546
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1011 CTCCAAGAAGTTTAAGACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGT 1070
Query 1547 CAAACTAGGAGTCAAGGAGCTTGCAGAAAAACCAAAACCACCTGAGAGCAGTGCTAACAC 1606
|||||||||||||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 1071 TAAACTAGGAGTCAAGGAGCTTGCAGAAAAACCAAAACCGCCTGTGAACAATGCTAACAC 1130
Query 1607 AGAGAATCAGAGCAATAAAACAAACC-GTAAGAGAAGCAGATCATCGAGGTGA 1658
||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1131 AGAGAATCAGAGCAAGAAAA-AAACCCGTAAGAGAAGCAGATCATCGAGGTGA 1182
> AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family
protein | chr1:19754214-19755843 REVERSE LENGTH=951
Length=951
Score = 621 bits (336), Expect = 6e-177
Identities = 437/486 (90%), Gaps = 6/486 (1%)
Strand=Plus/Plus
Query 834 AAGAATTGGGTGAAAAAGGTGCAAGCAGATTGGAAGATTCTTGAGAATG-ATTTGCCAGA 892
||||||||||||||| | | ||| ||| |||||||||||||| || | ||||||||||
Sbjct 166 AAGAATTGGGTGAAAGATATTCAAAAAGAGTGGAAGATTCTTGACAA-GAATTTGCCAGA 224
Query 893 GGCAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGG 952
| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 225 GACAATATTTGTCAGAGCATGTGAATCAAGAATTGATCTTTTGAGAGCTGTAATTATTGG 284
Query 953 AGCCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATAC 1012
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 285 AGCCGAGGGAACTCCTTACCATGACGGTCTCTTCTTTTTCGATATTCAGTTCCCAGATAC 344
Query 1013 CTATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCCGAA 1072
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 345 CTATCCTTCAGTGCCACCAAAAGTTCATTACCATTCGGGCGGGCTTAGAATCAACCCGAA 404
Query 1073 TCTATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCCGGCAGTGCTAG 1132
||||||||| ||||||||||| |||||||||||| || |||||||| |||| | ||
Sbjct 405 TCTATACAAATGTGGTAAAGTGTGCTTGAGTCTTATCAGTACCTGGACCGGTAAAAAGAG 464
Query 1133 GGAGAAATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACT 1192
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 465 GGAGAAATGGCTCCCCAAGGAGTCCACAATGTTGCAGCTTCTTGTCTCAATCCAAGCACT 524
Query 1193 CATCTTGAATGAAAAACCATACTT-TAACGAGCCTGGCTACGTACAGAGC-ATGGGGACT 1250
|||||||||||||||||||| || ||||||||||||||||| | | | | |||||||||
Sbjct 525 AATCTTGAATGAAAAACCATA-TTATAACGAGCCTGGCTACG-AGAAATCCATGGGGACT 582
Query 1251 GCATCAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTTAAAG 1310
||| |||||||||| ||||||||| ||| ||||||||||||||| |||| |||||||||
Sbjct 583 CCATTAGGCGAGTCCTATTCTAAAGATTATAGTGAGAACGTATTCGTATTTTCGTTAAAG 642
Query 1311 ACTATG 1316
||||||
Sbjct 643 ACTATG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82931300340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5