BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923841
Length=262
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53030.1 | Symbols: | Cytochrome C oxidase copper chaperone... 324 3e-88
AT3G15352.1 | Symbols: ATCOX17, COX17 | cytochrome c oxidase 17... 159 9e-39
> AT1G53030.1 | Symbols: | Cytochrome C oxidase copper chaperone
(COX17) | chr1:19760001-19761452 REVERSE LENGTH=530
Length=530
Score = 324 bits (175), Expect = 3e-88
Identities = 209/226 (92%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 22 GGATGAGTGGTTCACAAGCTCAAGACAGTGCGTGCTCCTTGGACCAGCCAAGCAAAAATG 81
|||||||||||| |||||| |||||||||||||| || |||||| ||||||||||| |||
Sbjct 87 GGATGAGTGGTTTACAAGCACAAGACAGTGCGTGTTCTTTGGACAAGCCAAGCAAAGATG 146
Query 82 TGGCTGCCACAGAGACGAAACCAAAGAAGAGGATATGCTGTGCTTGTCCTGATACAAAGA 141
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 147 TAGTTGCCACAGAGACAAAACCAAAGAAGAGGATATGTTGTGCTTGTCCTGATACAAAGA 206
Query 142 AGCTAAGAGATGAGTGCATTGTAGAACACGGTGAATCCGCTTGCACCAAATGGATCGAAG 201
| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 207 AACTTAGAGATGAATGCATTGTAGAACACGGTGAATCCGCTTGCACGAAATGGATCGAAG 266
Query 202 CTCATCTTTCGTGTCTTCGATCCGAGGGTTTCAAAGTTTGAGAGTA 247
||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 267 CTCATATTTTGTGTCTTCGATCAGAGGGTTTCAAAGTTTGAGAGTA 312
> AT3G15352.1 | Symbols: ATCOX17, COX17 | cytochrome c oxidase
17 | chr3:5179413-5180665 FORWARD LENGTH=544
Length=544
Score = 159 bits (86), Expect = 9e-39
Identities = 106/116 (91%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 91 CAGAGACGAAACCAAAGAAGAGGATATGCTGTGCTTGTCCTGATACAAAGAAGCTAAGAG 150
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct 218 CAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATACCAAGAAGCTGAGAG 277
Query 151 ATGAGTGCATTGTAGAACACGGTGAATCCGCTTGCACCAAATGGATCGAAGCTCAT 206
||||||||||||| || || |||||||| |||||||| ||||||||||| ||||||
Sbjct 278 ATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGATCGAGGCTCAT 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11963724262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5