BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923842
Length=494
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53035.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 758 0.0
AT3G15358.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 460 4e-129
> AT1G53035.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G15358.1);
Has 49 Blast hits to 49 proteins in 9 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19761700-19762551
REVERSE LENGTH=852
Length=852
Score = 758 bits (410), Expect = 0.0
Identities = 466/492 (95%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 1 TCTCTTCCTTTATTTTCATTC-ATGACTACATCATTTTCGATGAATCCATCTTCGTTTCG 59
|||||||||||| |||| || ||||||||| || | |||||||||||||||| ||||||
Sbjct 215 TCTCTTCCTTTA--TTCA-TCAATGACTACAGCAATATCGATGAATCCATCTTTGTTTCG 271
Query 60 AGTAATCTGTATACTCCATTCGATAATCGCGCTTACTAGTGGAACCCTAATGATGTTCTA 119
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 272 AGTAATCTGTATACTCCATTCGATAATTGCGCTTACTAGTGGAACCTTAATGATGTTCTA 331
Query 120 CACAGAGAAAGCTTCAATCTTTGGACCAGGAAGTGAGATTGCAAGCAAACTAAAAGGATC 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 332 CACAGAGAAAGCTTCAATCTTTGGACCAGGAAGTGAGATTGCTAGCAAACTAAAAGGATC 391
Query 180 AACGCCACATGATGAACTACTCATACAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTT 239
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 392 AACACCACACGATGAACTACTCATACAGATTTCTCAGTCATTCTCTGGTTTGCTTCTGTT 451
Query 240 TGCAATTGGTTTGGTACTGTTCATGGTGTCCTTTGTGAAAGACAGAGAGTTTCATAGCTT 299
||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 452 TGCAATTGGTTTGGTACTGTTCATGGTTTCGTTTGTGAAAGACAAAGAGTTTCATAGCTT 511
Query 300 CTTCGCTACTGGTTCGGTGATTCTTTATGTGTTAATGGCTATGTGGAGGGTTTTGTTCGA 359
||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 512 CTTCGCTGGTGGGTCCGTGATTCTGTATGTGTTAATGGCTATGTGGAGGGTTTTGTTCGA 571
Query 360 GTGGAAAATTGAAGATCTTGCTTATGAATGGCCTAAACAAGCTCTTGGAGACATTGCTTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GTGGAAAATTGAAGATCTTGCTTATGAATGGCCTAAACAAGCTCTTGGAGACATTGCTTT 631
Query 420 GGCTATTTCTTGGGTTTTCTTTCTTGTTTATTCTTGGAGAGAGAAGTATGATTGATGATG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 632 GGCTATTTCTTGGGTTTTCTTTCTTGTTTATTCTTGGAGAGAGAAGTATGATTGATG-T- 689
Query 480 TTTTTGATCTTT 491
|||| ||| |||
Sbjct 690 TTTT-GAT-TTT 699
> AT3G15358.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53035.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr3:5178013-5178838 FORWARD LENGTH=729
Length=729
Score = 460 bits (249), Expect = 4e-129
Identities = 386/452 (85%), Gaps = 10/452 (2%)
Strand=Plus/Plus
Query 38 CGATGAATCCATCT-TCGTTTCGAGTAATCTGTATACTCCATTCGATAATCGCGCTTACT 96
|||||||| ||| | || || || ||||||||||||||||||||||| ||||| || ||
Sbjct 94 CGATGAATTCATATCTC-TTCCGCGTAATCTGTATACTCCATTCGATTATCGCACTCACA 152
Query 97 AGTGGAACCCTAATGATGTTCTACACAGAGAAAGCTTCAATCTTTGGACCA-GGAAGTGA 155
|||||||| || |||||||||||||||||||||||||| ||||||||| || || |||||
Sbjct 153 AGTGGAACTCTGATGATGTTCTACACAGAGAAAGCTTCGATCTTTGGA-CATGGTAGTGA 211
Query 156 GATTGCAAGCAAACTAAAAGGATCAACGCCACATGATGAACTA-CTCATACAGATTTCTC 214
|| |||| ||| || ||||||||||| || || || || | | || || ||||||||||
Sbjct 212 TATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGC-AGCTTATTCAGATTTCTC 270
Query 215 AGTCATTCTCTGGTTTGCTTCTCTTTGCAATTGGTTTGGTACTGTTCATGGTGTCCTTTG 274
|||||||||||||||||||||||||||| || || ||||| || ||||||||||| ||||
Sbjct 271 AGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTGCTTTTCATGGTGTCGTTTG 330
Query 275 TGAAAGACAGAGAGTTTCATAGCTTCTTCGCTA-CTGGTTCGGTGATTCTTTATGTG-TT 332
|||||||||||||||||||||||||||| || | ||||||| |||||||| ||| || ||
Sbjct 331 TGAAAGACAGAGAGTTTCATAGCTTCTTTGC-AGCTGGTTCTGTGATTCTCTATATGGTT 389
Query 333 AATGGCTATGTGGAGGGTTTTGTTCGAGTGGAAAATTGAAGATCTTGCTTATGAATGGCC 392
| ||||| | ||||| ||| |||| |||||||| |||||||||||||||| |||||| ||
Sbjct 390 A-TGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTTGCTTTTGAATGTCC 448
Query 393 TAAACAAGCTCTTGGAGACATTGCTTTGGCTATTTCTTGGGTTTTCTTTCTTGTTTATTC 452
|| ||||| |||||||| |||||||| ||| | || ||||||||||| || |||||| |
Sbjct 449 CAAGCAAGCCCTTGGAGATATTGCTTTAGCTGTCTCATGGGTTTTCTTCCTCGTTTATAC 508
Query 453 TTGGAGAGAGAAGTATGATTGATGATGTTTTT 484
||||||||||||||||||||||| | |||||
Sbjct 509 ATGGAGAGAGAAGTATGATTGATGTTTTTTTT 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559814943
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5