BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923843
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53040.1 | Symbols: | Protein of unknown function (DUF616) ... 2564 0.0
> AT1G53040.1 | Symbols: | Protein of unknown function (DUF616)
| chr1:19764310-19767334 REVERSE LENGTH=2174
Length=2174
Score = 2564 bits (1388), Expect = 0.0
Identities = 1575/1665 (95%), Gaps = 14/1665 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTGTTTCTTCACAATGCTCACTTCTAATTCTAAAGACAAGGAAAGGTCTCTC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 274 TCTTCTTCTTGTTTCTTCACAATGCTCACTTCTAATTCTAAAGAGAAGGAAAGGTCTCTC 333
Query 61 TCCTTCTTATGTTGCTGGTACTTAGGTCGTCGACGAGTTGCTATGCTGCTCCTTCTTAGC 120
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 334 TCCTTCTTATGTTGCTGGTACTTAGGTCGTCGACGAGTTGCTATGCTTCTACTTCTCAGC 393
Query 121 CTTGCATTTGTTGTCTTTGTCTTGGGTTCTTACACTATCAACAAAGAGAGCAATAGTCCA 180
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 394 CTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAGAGAGCAATAGTCCA 453
Query 181 AACATTCATCAGAGTATTGAGACGATGGATTTTGGAAGCAACCAAACACCGATAAGTAGA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AATATTCATCAGAGTATTGAGACGATGGATTTTGGAAGCAACCAAACACCGATAAGTAGA 513
Query 241 GAATTGACTTCTTTCTATACACAGAACTCTGATAATGATCATATTAGAGATTCTTTTAAG 300
||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||| |
Sbjct 514 GAATTGACTTCTTTCTATACAAAGGAGTCTGATAATGATCATGTTAGAGATCCTTTTTTG 573
Query 301 TGGAATGGCATTGGAGGAAGTGATGTAGACGTCAACCA------TCC-TTC-T--C--CA 348
|||||||||||||||||||||||||||||||||||||| ||| ||| | | ||
Sbjct 574 TGGAATGGCATTGGAGGAAGTGATGTAGACGTCAACCATCCTCCTCCATTCTTACCTTCA 633
Query 349 TCGCATCACCATCCGTGTGATAGTTTTTCATTTCCTCCTCCTCCACCACCTGAAATGAGA 408
| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 634 TGGCATCACCATCCGTGTGATAGTTTTTCTTTTCCTCCTCCTCCACCACCTGGAATGAGA 693
Query 409 AGGCCTGGTCCACGCCCGTGTCCGGTATGCTATCTACCTCCAGAAGAGGCCTCAGCGCAT 468
||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 694 AGGCCTGGTCCACGCCCTTGTCCGGTATGCTACCTACCTCCAGAAGAGGCCTTAGCACAT 753
Query 469 ATGCCAAAGTATCGATTTGAATCTCCCGTGCTCAAGAATCTGACATATATCCATGAAGAG 528
||||||||||||| ||||||||||||| ||||||||||| |||||||||| | |||||||
Sbjct 754 ATGCCAAAGTATCCATTTGAATCTCCCTTGCTCAAGAATTTGACATATATACGTGAAGAG 813
Query 529 AGTCCTGTAAAACCTGAAGAAAGTCAAGGAGGCTCTGACTTCGGAGGTTATCCTTCTCTT 588
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 814 AGTCCTGTAAAACCTGAAGAAAGTGAAGGAGGCTCTGAATTCGGAGGTTATCCTTCTCTC 873
Query 589 GAGCATAGGGCTAACTCCTTTGACATAAAAGAGTCCATGACAGTGCATTGCGGATTTATT 648
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 874 GAGCATAGGACTAACTCTTTTGACATAAAAGAGTCCATGACAGTGCATTGCGGGTTTATT 933
Query 649 AAAGGAACAAAACCGGGTCACCAAACTGGATTTGACATTGATGAGGATATCCTTCATGAG 708
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 934 AAAGGAACAAAACCGGGCCACCAAACTGGATTTGACATCGATGAGGATATCCTTCATGAG 993
Query 709 TTGGACCAGTCCCATGATGTGATTGTCGCGTCAGCGATATTTGGAAAGTATGACATAATT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TTGGACCAGTCCCATGATGTGATTGTCGCGTCAGCGATATTTGGAAAGTATGACATAATT 1053
Query 769 CAAGAACCAGTGAACATCAGTGAAATGGCGAGGAAGAACATCCCATTCTACATGTTTGTT 828
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CAAGAACCGGTGAACATCAGTGAAATGGCGAGGAAGAACATCCCATTCTACATGTTTGTT 1113
Query 829 GATGAAGAAACACATTTATACCTTAAGAACACGTCGAGTTATACAGACGATAACAAGAGA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GATGAAGAAACACATTTATACCTTAAGAACACGTCGAGTTATACAGACGATAACAAGAGA 1173
Query 889 GTAGGATTGTGGAGGATCATTGTTGTACATAGTGTCCCTTATACAGATGCACGGCGTAAT 948
|| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1174 GTGGGATTGTGGAGGATCATTGTTGTACATAATGTCCCTTATACCGATGCACGGCGTAAT 1233
Query 949 GGAAAGGTTCCGAAGCTTCTATTGCATAGATTATTCCCAAATGTCCGGTACTCTATATGG 1008
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GGAAAGGTTCCGAAGCTTTTATTGCATAGATTATTCCCAAATGTCCGGTACTCTATATGG 1293
Query 1009 GTTGATGCAAAGCTCCAGCTTGTTGTAGATCCATATCAAATCCTTGAGAGGTTCTTGTGG 1068
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1294 GTTGATGCAAAGCTCCAGCTTGTTGTAGATCCATATCAAATCCTTGAAAGGTTCTTGTGG 1353
Query 1069 AGAACGAATTCTAGTTTCGCAATCTCGAGACATTACCGACGTTTTGATGTGTTTGTAGAG 1128
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 AGAACGAATTCTAGTTTTGCAATCTCGAGACATTACCGACGTTTTGATGTGTTTGTAGAG 1413
Query 1129 GCTGAGGCGAATAAGGCTGCAAGAAAGTACGACAATGCCTCAATTGATTACCAGGTAGAG 1188
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1414 GCTGAAGCGAATAAGGCCGCAAGAAAGTACGACAATGCCTCAATAGATTACCAAGTAGAG 1473
Query 1189 TTCTACAAGAAGGAAGGTTTAACACCTTATACCGAGGCTAAGCTTCCAATAACTAGTGAT 1248
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1474 TTCTACAAGAAGGAAGGTTTAACACCTTATACGGAGGCTAAGCTTCCAATAACAAGTGAT 1533
Query 1249 GTTCCTGAAGGTTGTACCATCATAAGAGAACACATACCGATCACAAACCTTTTCACGTGT 1308
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1534 GTCCCTGAAGGTTGTACCATCATAAGAGAACACATACCGATCACAAACCTTTTCACATGT 1593
Query 1309 GTTTGGTTCAACGAGGTAGACCGGTTTACTTCCAGAGATCAGCTAAGCTTTGCAATTGCA 1368
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1594 GTATGGTTCAACGAGGTAGATCGGTTTACTTCAAGAGATCAGCTAAGCTTTGCAATTGCG 1653
Query 1369 AGAGACAAGATAAGAGAGAAAGTTGATTGGAACATCAATATGTTCTTAGACTGTGAAAGA 1428
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1654 AGAGACAAAATAAGAGAGAAAGTTGATTGGAGCATCAATATGTTCTTGGACTGTGAAAGA 1713
Query 1429 CGCAACTTTGTGAAACAGGTATATCATAGAGACATTTTGATGAACATGAAACCTCCTCGA 1488
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1714 CGCAACTTTGTGAAACAGGTATATCATAGAGACGTTTTGCTGACCATGAAACCTCCTCGA 1773
Query 1489 GCTTCTTCTAGGATTT-TTCTCGAGCCACCGGCTTTGCCACGTGGAAGATTAGTTGGTGG 1547
||||||||||| | || ||| |||||||| || ||| |||||||||||||||| |||||
Sbjct 1774 GCTTCTTCTAG-AGTTCTTCCCGAGCCACTGGTTTTACCACGTGGAAGATTAGCCGGTGG 1832
Query 1548 TAGAGCCACAACGGGGAAGAAGACTCCGGGACAACGTGGAAAAAGGCGTCACCGGAAAGT 1607
||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1833 TAGAGCCACGCCGGGTAAGAAGACTCCGGGACAACGCGGGAAAAGGCGTCACCGGAAAGT 1892
Query 1608 TTCAGCCGGTGGAAGAAACATGAGATAGAGAGAGAGCTTCTACAC 1652
|||||||||||| ||||||||| ||||||||||||| ||| ||||
Sbjct 1893 TTCAGCCGGTGGCAGAAACATGTGATAGAGAGAGAGATTCCACAC 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81927289440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5