BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923843 Length=1658 Score E Sequences producing significant alignments: (Bits) Value AT1G53040.1 | Symbols: | Protein of unknown function (DUF616) ... 2564 0.0 > AT1G53040.1 | Symbols: | Protein of unknown function (DUF616) | chr1:19764310-19767334 REVERSE LENGTH=2174 Length=2174 Score = 2564 bits (1388), Expect = 0.0 Identities = 1575/1665 (95%), Gaps = 14/1665 (1%) Strand=Plus/Plus Query 1 TCTTCTTCTTGTTTCTTCACAATGCTCACTTCTAATTCTAAAGACAAGGAAAGGTCTCTC 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 274 TCTTCTTCTTGTTTCTTCACAATGCTCACTTCTAATTCTAAAGAGAAGGAAAGGTCTCTC 333 Query 61 TCCTTCTTATGTTGCTGGTACTTAGGTCGTCGACGAGTTGCTATGCTGCTCCTTCTTAGC 120 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct 334 TCCTTCTTATGTTGCTGGTACTTAGGTCGTCGACGAGTTGCTATGCTTCTACTTCTCAGC 393 Query 121 CTTGCATTTGTTGTCTTTGTCTTGGGTTCTTACACTATCAACAAAGAGAGCAATAGTCCA 180 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 394 CTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAGAGAGCAATAGTCCA 453 Query 181 AACATTCATCAGAGTATTGAGACGATGGATTTTGGAAGCAACCAAACACCGATAAGTAGA 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454 AATATTCATCAGAGTATTGAGACGATGGATTTTGGAAGCAACCAAACACCGATAAGTAGA 513 Query 241 GAATTGACTTCTTTCTATACACAGAACTCTGATAATGATCATATTAGAGATTCTTTTAAG 300 ||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||| | Sbjct 514 GAATTGACTTCTTTCTATACAAAGGAGTCTGATAATGATCATGTTAGAGATCCTTTTTTG 573 Query 301 TGGAATGGCATTGGAGGAAGTGATGTAGACGTCAACCA------TCC-TTC-T--C--CA 348 |||||||||||||||||||||||||||||||||||||| ||| ||| | | || Sbjct 574 TGGAATGGCATTGGAGGAAGTGATGTAGACGTCAACCATCCTCCTCCATTCTTACCTTCA 633 Query 349 TCGCATCACCATCCGTGTGATAGTTTTTCATTTCCTCCTCCTCCACCACCTGAAATGAGA 408 | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 634 TGGCATCACCATCCGTGTGATAGTTTTTCTTTTCCTCCTCCTCCACCACCTGGAATGAGA 693 Query 409 AGGCCTGGTCCACGCCCGTGTCCGGTATGCTATCTACCTCCAGAAGAGGCCTCAGCGCAT 468 ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||| Sbjct 694 AGGCCTGGTCCACGCCCTTGTCCGGTATGCTACCTACCTCCAGAAGAGGCCTTAGCACAT 753 Query 469 ATGCCAAAGTATCGATTTGAATCTCCCGTGCTCAAGAATCTGACATATATCCATGAAGAG 528 ||||||||||||| ||||||||||||| ||||||||||| |||||||||| | ||||||| Sbjct 754 ATGCCAAAGTATCCATTTGAATCTCCCTTGCTCAAGAATTTGACATATATACGTGAAGAG 813 Query 529 AGTCCTGTAAAACCTGAAGAAAGTCAAGGAGGCTCTGACTTCGGAGGTTATCCTTCTCTT 588 |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 814 AGTCCTGTAAAACCTGAAGAAAGTGAAGGAGGCTCTGAATTCGGAGGTTATCCTTCTCTC 873 Query 589 GAGCATAGGGCTAACTCCTTTGACATAAAAGAGTCCATGACAGTGCATTGCGGATTTATT 648 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 874 GAGCATAGGACTAACTCTTTTGACATAAAAGAGTCCATGACAGTGCATTGCGGGTTTATT 933 Query 649 AAAGGAACAAAACCGGGTCACCAAACTGGATTTGACATTGATGAGGATATCCTTCATGAG 708 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 934 AAAGGAACAAAACCGGGCCACCAAACTGGATTTGACATCGATGAGGATATCCTTCATGAG 993 Query 709 TTGGACCAGTCCCATGATGTGATTGTCGCGTCAGCGATATTTGGAAAGTATGACATAATT 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 TTGGACCAGTCCCATGATGTGATTGTCGCGTCAGCGATATTTGGAAAGTATGACATAATT 1053 Query 769 CAAGAACCAGTGAACATCAGTGAAATGGCGAGGAAGAACATCCCATTCTACATGTTTGTT 828 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1054 CAAGAACCGGTGAACATCAGTGAAATGGCGAGGAAGAACATCCCATTCTACATGTTTGTT 1113 Query 829 GATGAAGAAACACATTTATACCTTAAGAACACGTCGAGTTATACAGACGATAACAAGAGA 888 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1114 GATGAAGAAACACATTTATACCTTAAGAACACGTCGAGTTATACAGACGATAACAAGAGA 1173 Query 889 GTAGGATTGTGGAGGATCATTGTTGTACATAGTGTCCCTTATACAGATGCACGGCGTAAT 948 || |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1174 GTGGGATTGTGGAGGATCATTGTTGTACATAATGTCCCTTATACCGATGCACGGCGTAAT 1233 Query 949 GGAAAGGTTCCGAAGCTTCTATTGCATAGATTATTCCCAAATGTCCGGTACTCTATATGG 1008 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1234 GGAAAGGTTCCGAAGCTTTTATTGCATAGATTATTCCCAAATGTCCGGTACTCTATATGG 1293 Query 1009 GTTGATGCAAAGCTCCAGCTTGTTGTAGATCCATATCAAATCCTTGAGAGGTTCTTGTGG 1068 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1294 GTTGATGCAAAGCTCCAGCTTGTTGTAGATCCATATCAAATCCTTGAAAGGTTCTTGTGG 1353 Query 1069 AGAACGAATTCTAGTTTCGCAATCTCGAGACATTACCGACGTTTTGATGTGTTTGTAGAG 1128 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1354 AGAACGAATTCTAGTTTTGCAATCTCGAGACATTACCGACGTTTTGATGTGTTTGTAGAG 1413 Query 1129 GCTGAGGCGAATAAGGCTGCAAGAAAGTACGACAATGCCTCAATTGATTACCAGGTAGAG 1188 ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||| Sbjct 1414 GCTGAAGCGAATAAGGCCGCAAGAAAGTACGACAATGCCTCAATAGATTACCAAGTAGAG 1473 Query 1189 TTCTACAAGAAGGAAGGTTTAACACCTTATACCGAGGCTAAGCTTCCAATAACTAGTGAT 1248 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1474 TTCTACAAGAAGGAAGGTTTAACACCTTATACGGAGGCTAAGCTTCCAATAACAAGTGAT 1533 Query 1249 GTTCCTGAAGGTTGTACCATCATAAGAGAACACATACCGATCACAAACCTTTTCACGTGT 1308 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1534 GTCCCTGAAGGTTGTACCATCATAAGAGAACACATACCGATCACAAACCTTTTCACATGT 1593 Query 1309 GTTTGGTTCAACGAGGTAGACCGGTTTACTTCCAGAGATCAGCTAAGCTTTGCAATTGCA 1368 || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1594 GTATGGTTCAACGAGGTAGATCGGTTTACTTCAAGAGATCAGCTAAGCTTTGCAATTGCG 1653 Query 1369 AGAGACAAGATAAGAGAGAAAGTTGATTGGAACATCAATATGTTCTTAGACTGTGAAAGA 1428 |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1654 AGAGACAAAATAAGAGAGAAAGTTGATTGGAGCATCAATATGTTCTTGGACTGTGAAAGA 1713 Query 1429 CGCAACTTTGTGAAACAGGTATATCATAGAGACATTTTGATGAACATGAAACCTCCTCGA 1488 ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| Sbjct 1714 CGCAACTTTGTGAAACAGGTATATCATAGAGACGTTTTGCTGACCATGAAACCTCCTCGA 1773 Query 1489 GCTTCTTCTAGGATTT-TTCTCGAGCCACCGGCTTTGCCACGTGGAAGATTAGTTGGTGG 1547 ||||||||||| | || ||| |||||||| || ||| |||||||||||||||| ||||| Sbjct 1774 GCTTCTTCTAG-AGTTCTTCCCGAGCCACTGGTTTTACCACGTGGAAGATTAGCCGGTGG 1832 Query 1548 TAGAGCCACAACGGGGAAGAAGACTCCGGGACAACGTGGAAAAAGGCGTCACCGGAAAGT 1607 ||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 1833 TAGAGCCACGCCGGGTAAGAAGACTCCGGGACAACGCGGGAAAAGGCGTCACCGGAAAGT 1892 Query 1608 TTCAGCCGGTGGAAGAAACATGAGATAGAGAGAGAGCTTCTACAC 1652 |||||||||||| ||||||||| ||||||||||||| ||| |||| Sbjct 1893 TTCAGCCGGTGGCAGAAACATGTGATAGAGAGAGAGATTCCACAC 1937 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81927289440 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5