BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923846
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53070.1 | Symbols: | Legume lectin family protein | chr1:1... 1338 0.0
> AT1G53070.1 | Symbols: | Legume lectin family protein | chr1:19778333-19779373
FORWARD LENGTH=1041
Length=1041
Score = 1338 bits (724), Expect = 0.0
Identities = 804/843 (95%), Gaps = 3/843 (0%)
Strand=Plus/Plus
Query 16 AAAATATGAAGATCCAAATACTCTGTTTCACCACTCTGTTCTTAGCTATCTTCACCCCTC 75
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 34 AAAAAATGAAGATCCAAATACTCTGTTTCACCACTCTGTTCTTAGCTATCTTCACCTCTC 93
Query 76 AAGTCACCACTGCTTACAAATTCAAATTCGATTACTTTGGTAATGGTACTGATCTAATAT 135
||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||
Sbjct 94 AAGTCACCACTGCTTACAAATTCAAATTCGATTACTTTGGTAACGGCACCGATCCAATAT 153
Query 136 CATTCCATGGTGACGCTGAGTATGGTCCTGACACTGATGGCATGAGCCGGTCCGGAGCCA 195
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 154 CATTCCATGGAGACGCTGAGTATGGTCCTGACACTGATGGCAAGAGCCGGTCCGGAGCCA 213
Query 196 TCGCATTGACCCGAGACAACATCCCTTTCTCTCATGGTCGAGCTATTTTAACCACTCCAA 255
|||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 214 TCGCATTGACTCGAGACAACATTCCTTTCTCTCATGGTCGAGCCATTTTCACCACTCCAA 273
Query 256 TCACTTTCAAGCCTAATGCTTCAGCTCTTTACCCTTTTAAAACCTCTTTCACTTTCTCCA 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TCACTTTCAAGCCTAATGCTTCAGCTCTTTACCCTTTTAAAACCTCTTTCACTTTCTCCA 333
Query 316 TCACTCCTAAAACAAACCCTAATCAAGGTCATGGTCTTGCCTTCATCGTCGTCCCAAGTA 375
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 334 TTACTCCTAAAACAAACCCTAATCAAGGTCATGGCCTTGCTTTCATCGTCGTCCCAAGTA 393
Query 376 ACCGAAACGACGCCGGTTCCGGTTTAGGCTATCTCAGTCTTCTGAACCGAACCAACAACG 435
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 394 ACCAAAACGACGCCGGTTCCGGTTTAGGCTATCTCAGTCTTCTGAACCGAACCAATAACG 453
Query 436 GTAATCCTAATAACCACCTTTTTGCCGTTGAATTTGATGTCTTTCAAGACAAATCTCTTG 495
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 454 GTAATCCTAATAACCACCTCTTTGCCGTTGAGTTCGATGTCTTTCAAGACAAATCTCTTG 513
Query 496 GCGACGTGAACGATAACCATGTCGGAATCGATATTAATTCGGTTGATTCGGTGGTTTCTG 555
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GCGACATGAACGATAACCATGTCGGAATCGATATTAATTCGGTTGATTCGGTGGTTTCTG 573
Query 556 TGAAATCCGGTTATTGGGTTATGACAAGAAACGGTTGGTTGTTTAAGGAATTGAAGTTGA 615
|||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| | |
Sbjct 574 TGAAATCCGGTTATTGGGTTATGACAAGAAGCGGTTGGTTATTTAAGGATTTGAAGCTAA 633
Query 616 GTAGTGGAGATAGATACAAGGCTTGGATTGAGTACAACAATAATTATAAAGTCA-TCTCT 674
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 634 GTAGTGGAGATAGATACAAGGCTTGGATTGAGTACAACAACAATTATAAAGT-AGTCTCT 692
Query 675 GTTACGATTGGTTTGGCGCATTTGAAGAAACCGAACCGGCCATTGATTGAAGCAAAATTC 734
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GTTACGATTGGTTTAGCGCATTTGAAGAAACCGAACCGGCCATTGATTGAAGCAAAATTC 752
Query 735 GATCTTTCCAAGGTTATTCACGAGCAAATGTATACCGGTTTTGCCGGTTCGATGGGTCGT 794
|||||||||||||| || |||||| |||||||||||||||||| |||||||||||||||
Sbjct 753 GATCTTTCCAAGGTCATACACGAGGTAATGTATACCGGTTTTGCTGGTTCGATGGGTCGT 812
Query 795 GGTGTCGAGCGTCACGAGATTTGGGACTGGACTTTCCAGAACTAA-AAAACCGGTTCGGT 853
||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||
Sbjct 813 GGTGTCGAGCGTCACGAGATTTGGGACTGGACTTTCCAGAATTAAGAAAACAGGTTTGGT 872
Query 854 TTG 856
|||
Sbjct 873 TTG 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5