BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923862

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57790.1 | Symbols:  | Pectin lyase-like superfamily protein...   159    6e-39


> AT3G57790.1 | Symbols:  | Pectin lyase-like superfamily protein 
| chr3:21405387-21407624 REVERSE LENGTH=1767
Length=1767

 Score =  159 bits (86),  Expect = 6e-39
 Identities = 124/142 (87%), Gaps = 4/142 (3%)
 Strand=Plus/Minus

Query  54   CACCGAGAAGAACTGCGTTCTGCGTCACAT--A-AACAACGCCAGATCAGAGATGGAGCT  110
            |||||||||| || ||||||| ||||||||  | ||  |||||||||| |||||||||||
Sbjct  607  CACCGAGAAGCACGGCGTTCTCCGTCACATCGAGAATGACGCCAGATCGGAGATGGAGCT  548

Query  111  TAGCGGTGAAATCGTTGCCGGAAGTGAAAACGACATGGCAGATGGTA-AAGACGATGTGT  169
            ||||||| |||| ||||||||||| |||||||||  ||||||||| | || | |||||||
Sbjct  547  TAGCGGTCAAATAGTTGCCGGAAGGGAAAACGACGCGGCAGATGGAAGAAAAAGATGTGT  488

Query  170  AGTGACGATTGCAGGCGTCAAT  191
            ||||||||||||||||||||||
Sbjct  487  AGTGACGATTGCAGGCGTCAAT  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8450626968


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5