BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923871
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST... 1591 0.0
> AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST
Arabidopsis thaliana protein match is: cobalt ion binding
(TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins
in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140;
Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes
- 3982 (source: NCBI BLink). | chr1:19859267-19860976 REVERSE
LENGTH=1408
Length=1408
Score = 1591 bits (861), Expect = 0.0
Identities = 1156/1290 (90%), Gaps = 53/1290 (4%)
Strand=Plus/Plus
Query 1 TCTCCATTTGTATCATCTTCCAATGGCGATTTCTCGTTCCATCCTTCGCCGGCCGGCGAA 60
||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 47 TCTCCATTTTTATCATCTTCCAATGGCGATTTCTCGTTCCATCCTTCACCGGCCAGCTAA 106
Query 61 ATCCTTTTCCTCACTGTTCACTCGTTCCTTCTCCTCTTCATCTCCTCTCGCCAATTCCCC 120
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 107 ATCCTTTTCCTCACTGTTCACTCGTTCCTTCTCTTCGTCATCTCCTCTCGCCAATTCCCC 166
Query 121 -AGCGGTTTCTCGATCCGCGTCCTCGTTACTGAACCGTTCTCGTTCTCTCGTTGCTGGAC 179
| | ||||||||||| ||||| ||||| |||| ||||| |||||||||||| |||||
Sbjct 167 TA-CTGTTTCTCGATCTGCGTCTTCGTTGTTGAATCGTTCACGTTCTCTCGTTTCTGGAT 225
Query 180 TCTCAGCGTTGGTCCGTGCTGGTGTATCTTC-GGCTAGGTGTATGTCTACGCAGGCTACT 238
||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||
Sbjct 226 TCTCAGCGTTGGTCCGTGCCGGTGTATC-TCTAGCTAGGTGTATGTCTACGCAGGTTACT 284
Query 239 T-CGTCTTCACTGAATGATCCGAACCCTAATTGGTCGAATAAGCCACCAAAGGAGACGAT 297
| || |||| ||||||||||||| |||||| ||||||||| |||||||||||| |||||
Sbjct 285 TCCG-CTTCGCTGAATGATCCGAGCCCTAACTGGTCGAATCGGCCACCAAAGGATACGAT 343
Query 298 TTTGCTCGATGGTTGTGATTTTGAGCATTGGCTTGTTGTCATGGAGAAACCTGAAGGAGA 357
|||||| |||||||||||||| ||||||||| |||||||||| | | | | |
Sbjct 344 TTTGCTTGATGGTTGTGATTTCGAGCATTGGTTTGTTGTCAT---G------G-A--A-A 390
Query 358 TCTCACTAGAGACGAGATTATTGATTACTACATCAAAACCCTAGCTCAAGTTGTTGGCAG 417
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TCTCTCTAGAGACGAGATTATTGATTACTACATCAAAACCCTAGCTCAAGTTGTTGGCAG 450
Query 418 TGAAGAGGAGGCAAGAATGAAGATTTACTCTGTGTCACACAAATGCTACTTTGCTTTTGG 477
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 451 TGAAGAGGAGGCAAGGATGAAGATTTACTCTGTGTCGCACAAATGCTACTTTGCTTTTGG 510
Query 478 AGCTCTTGTTTCAGAAGATCTTTCATATAAGATCAAAGAGTTGCCTAAGG-TGAGATGGG 536
||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||||
Sbjct 511 AGCTCTTGTTTCAGAAGATCTTTCACATAAGATCAAAGAGTTGCCTAAGGTTAAG-TGGG 569
Query 537 TTCTTCCTGATTCCTACTTGGATGTGAA-AAGCAAAAACTATGGAGGAGAACCTTTCATT 595
|||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||
Sbjct 570 TTCTTCCTGATTCCTACTTGGATGGGAAGAA-TAAAGACTATGGAGGAGAACCTTTCATT 628
Query 596 GATGGAAAGGCTGTTCCTTATGACCCAAAGTATCATGAAGAGTGGATAAAAAACAATGAT 655
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 629 GATGGAAAGGCTGTTCCTTATGACCCAAAGTATCATGAAGAATGGATAAGAAACAATGCT 688
Query 656 AGCA-GCAACTCACGCACTCGCAGGCCTCGCACCTTGTCTGGAACC-AGGGACTTTGGGA 713
| | |||||| | | | || | ||| ||| | | || || | || | |||
Sbjct 689 A--ATGCAACTAATG-A-AAACA-G--ACGC-CCTCG-CAGG--CCTCGCAAC--TCGGA 735
Query 714 -GGAGAAG-AGAGAACGTTAGGGGAAACCAAGACACGGGTTACAGAGGTCCACCACCAAA 771
|||| | || ||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 736 TGGAG--GCAG-GAACGATAGGGGAAACCAAGACACGGGTTACAGACGTCCACCACCAAA 792
Query 772 CCAGGGTATGGGAGGTGTTCCACCTCCACCACCTCACATAGGCAACAACCCAAACATGCC 831
||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 793 CCAAGGTATGGGAGGTGCTCCACCTCCACCGCCTCACATAGGCAACAACCCAAACATGCC 852
Query 832 CCCTCATATGCCACCACCTAACATGAACCAGAACTACAGAGG---TCCTCCACCACCAAA 888
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 853 TCCTCATATACAACCACCTAACATGAACCAGAACTACAGAGGTCCTCCTCCACCACCAAA 912
Query 889 CATGGGTCAGAACTATCAGGGACCACCACCACCGAACATGAACCAGAACTACCAGGGACC 948
|||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 913 CATGAACCAGAACTATCAGGGACCACCAGCACCAAACATGAACCAGAACTATCAGGGACC 972
Query 949 TCCACCACCAAACATGGGTCAGAATTACCAGGGACCACCACCACCAAACATGAATCAGCA 1008
||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| | ||
Sbjct 973 TCCACCATCAAACATGGGTCAGAACTACCAGGGACCACCACCGCCAAACATGAA-C--CA 1029
Query 1009 GAACTACCAGGAACCTCCACCACCAAACATGAACCAGAGTTATCAGGGACCTCCACCGTC 1068
|| ||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1030 GAGCTATCAGGGACCTCCACCGCCAAACATGAACCAGAGCTATCAGGGACCTCCACCGTC 1089
Query 1069 GAACACGGGCCAGAACTACAGGGGACCTTCACCACCGCCACCAAACATGAGTCAGAATTA 1128
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1090 GAACATGGGCCAGAACTACAGGGGACCTTCACTGCCGCCACCAAACATGAGTCAGAATTA 1149
Query 1129 CCAGGGACCACCACCACCGAACATGAATGGAGGATGGTCTGGAAACTACCAGCAGAACGG 1188
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 CGAGGGACCACCACCACCGAACATGAATGGAGGATGGTCTGGAAACTACCAGCAGAACGG 1209
Query 1189 AGGTTACCAACAA---GGTCAGGGTGGTGGAATGCAGCAACAGCCTTACCCACCCAATAG 1245
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TGGATACCAACAACAAGGTCAGGGTGGTGGAATGCAGCAACAGCCTTACCCACCCAATAG 1269
Query 1246 GGACCAGTAGTTGAACCGTCTTGGGTTTTC 1275
| ||||| |||| |||||||||| ||||||
Sbjct 1270 GAACCAG-AGTTAAACCGTCTTGTGTTTTC 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5