BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923871 Length=1275 Score E Sequences producing significant alignments: (Bits) Value AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST... 1591 0.0 > AT1G53260.1 | Symbols: | LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140; Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes - 3982 (source: NCBI BLink). | chr1:19859267-19860976 REVERSE LENGTH=1408 Length=1408 Score = 1591 bits (861), Expect = 0.0 Identities = 1156/1290 (90%), Gaps = 53/1290 (4%) Strand=Plus/Plus Query 1 TCTCCATTTGTATCATCTTCCAATGGCGATTTCTCGTTCCATCCTTCGCCGGCCGGCGAA 60 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || || Sbjct 47 TCTCCATTTTTATCATCTTCCAATGGCGATTTCTCGTTCCATCCTTCACCGGCCAGCTAA 106 Query 61 ATCCTTTTCCTCACTGTTCACTCGTTCCTTCTCCTCTTCATCTCCTCTCGCCAATTCCCC 120 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 107 ATCCTTTTCCTCACTGTTCACTCGTTCCTTCTCTTCGTCATCTCCTCTCGCCAATTCCCC 166 Query 121 -AGCGGTTTCTCGATCCGCGTCCTCGTTACTGAACCGTTCTCGTTCTCTCGTTGCTGGAC 179 | | ||||||||||| ||||| ||||| |||| ||||| |||||||||||| ||||| Sbjct 167 TA-CTGTTTCTCGATCTGCGTCTTCGTTGTTGAATCGTTCACGTTCTCTCGTTTCTGGAT 225 Query 180 TCTCAGCGTTGGTCCGTGCTGGTGTATCTTC-GGCTAGGTGTATGTCTACGCAGGCTACT 238 ||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||| Sbjct 226 TCTCAGCGTTGGTCCGTGCCGGTGTATC-TCTAGCTAGGTGTATGTCTACGCAGGTTACT 284 Query 239 T-CGTCTTCACTGAATGATCCGAACCCTAATTGGTCGAATAAGCCACCAAAGGAGACGAT 297 | || |||| ||||||||||||| |||||| ||||||||| |||||||||||| ||||| Sbjct 285 TCCG-CTTCGCTGAATGATCCGAGCCCTAACTGGTCGAATCGGCCACCAAAGGATACGAT 343 Query 298 TTTGCTCGATGGTTGTGATTTTGAGCATTGGCTTGTTGTCATGGAGAAACCTGAAGGAGA 357 |||||| |||||||||||||| ||||||||| |||||||||| | | | | | Sbjct 344 TTTGCTTGATGGTTGTGATTTCGAGCATTGGTTTGTTGTCAT---G------G-A--A-A 390 Query 358 TCTCACTAGAGACGAGATTATTGATTACTACATCAAAACCCTAGCTCAAGTTGTTGGCAG 417 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 TCTCTCTAGAGACGAGATTATTGATTACTACATCAAAACCCTAGCTCAAGTTGTTGGCAG 450 Query 418 TGAAGAGGAGGCAAGAATGAAGATTTACTCTGTGTCACACAAATGCTACTTTGCTTTTGG 477 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 451 TGAAGAGGAGGCAAGGATGAAGATTTACTCTGTGTCGCACAAATGCTACTTTGCTTTTGG 510 Query 478 AGCTCTTGTTTCAGAAGATCTTTCATATAAGATCAAAGAGTTGCCTAAGG-TGAGATGGG 536 ||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||| Sbjct 511 AGCTCTTGTTTCAGAAGATCTTTCACATAAGATCAAAGAGTTGCCTAAGGTTAAG-TGGG 569 Query 537 TTCTTCCTGATTCCTACTTGGATGTGAA-AAGCAAAAACTATGGAGGAGAACCTTTCATT 595 |||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||| Sbjct 570 TTCTTCCTGATTCCTACTTGGATGGGAAGAA-TAAAGACTATGGAGGAGAACCTTTCATT 628 Query 596 GATGGAAAGGCTGTTCCTTATGACCCAAAGTATCATGAAGAGTGGATAAAAAACAATGAT 655 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | Sbjct 629 GATGGAAAGGCTGTTCCTTATGACCCAAAGTATCATGAAGAATGGATAAGAAACAATGCT 688 Query 656 AGCA-GCAACTCACGCACTCGCAGGCCTCGCACCTTGTCTGGAACC-AGGGACTTTGGGA 713 | | |||||| | | | || | ||| ||| | | || || | || | ||| Sbjct 689 A--ATGCAACTAATG-A-AAACA-G--ACGC-CCTCG-CAGG--CCTCGCAAC--TCGGA 735 Query 714 -GGAGAAG-AGAGAACGTTAGGGGAAACCAAGACACGGGTTACAGAGGTCCACCACCAAA 771 |||| | || ||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 736 TGGAG--GCAG-GAACGATAGGGGAAACCAAGACACGGGTTACAGACGTCCACCACCAAA 792 Query 772 CCAGGGTATGGGAGGTGTTCCACCTCCACCACCTCACATAGGCAACAACCCAAACATGCC 831 ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 793 CCAAGGTATGGGAGGTGCTCCACCTCCACCGCCTCACATAGGCAACAACCCAAACATGCC 852 Query 832 CCCTCATATGCCACCACCTAACATGAACCAGAACTACAGAGG---TCCTCCACCACCAAA 888 |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 853 TCCTCATATACAACCACCTAACATGAACCAGAACTACAGAGGTCCTCCTCCACCACCAAA 912 Query 889 CATGGGTCAGAACTATCAGGGACCACCACCACCGAACATGAACCAGAACTACCAGGGACC 948 |||| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||| Sbjct 913 CATGAACCAGAACTATCAGGGACCACCAGCACCAAACATGAACCAGAACTATCAGGGACC 972 Query 949 TCCACCACCAAACATGGGTCAGAATTACCAGGGACCACCACCACCAAACATGAATCAGCA 1008 ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| | || Sbjct 973 TCCACCATCAAACATGGGTCAGAACTACCAGGGACCACCACCGCCAAACATGAA-C--CA 1029 Query 1009 GAACTACCAGGAACCTCCACCACCAAACATGAACCAGAGTTATCAGGGACCTCCACCGTC 1068 || ||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1030 GAGCTATCAGGGACCTCCACCGCCAAACATGAACCAGAGCTATCAGGGACCTCCACCGTC 1089 Query 1069 GAACACGGGCCAGAACTACAGGGGACCTTCACCACCGCCACCAAACATGAGTCAGAATTA 1128 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1090 GAACATGGGCCAGAACTACAGGGGACCTTCACTGCCGCCACCAAACATGAGTCAGAATTA 1149 Query 1129 CCAGGGACCACCACCACCGAACATGAATGGAGGATGGTCTGGAAACTACCAGCAGAACGG 1188 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1150 CGAGGGACCACCACCACCGAACATGAATGGAGGATGGTCTGGAAACTACCAGCAGAACGG 1209 Query 1189 AGGTTACCAACAA---GGTCAGGGTGGTGGAATGCAGCAACAGCCTTACCCACCCAATAG 1245 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1210 TGGATACCAACAACAAGGTCAGGGTGGTGGAATGCAGCAACAGCCTTACCCACCCAATAG 1269 Query 1246 GGACCAGTAGTTGAACCGTCTTGGGTTTTC 1275 | ||||| |||| |||||||||| |||||| Sbjct 1270 GAACCAG-AGTTAAACCGTCTTGTGTTTTC 1298 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62700480705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5