BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923873
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53280.1 | Symbols: | Class I glutamine amidotransferase-li... 2224 0.0
AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-li... 1027 0.0
> AT1G53280.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr1:19864770-19867389 REVERSE LENGTH=1537
Length=1537
Score = 2224 bits (1204), Expect = 0.0
Identities = 1307/1356 (96%), Gaps = 9/1356 (1%)
Strand=Plus/Plus
Query 5 aaaaaaaaaaaCGTCAATGGCGTCGTCGTCGTCGTTGTGTCATTGCTATTTTAACCCAAT 64
|||||||||||||||||| | | |||||||||||||||||||| ||||||||||| |||
Sbjct 33 AAAAAAAAAAACGTCAAT-G-G-CGTCGTCGTCGTTGTGTCATCGCTATTTTAACAAAAT 89
Query 65 CACTGTCACTCCCTTCCCTAACACT---AAACGCAATCACTCTTCT-C--GACGAATCTC 118
||||||||||||||| ||||||| |||| | |||||| |||| | ||||||||||
Sbjct 90 CACTGTCACTCCCTTTTTTAACACTAAAAAACTCCATCACTATTCTCCGAGACGAATCTC 149
Query 119 TCTTCGTGTAAATCGACGATCCTTCTCTATCTCTGCAACTATGTCTTCATCTGCTAAGAA 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 150 TCTTCGTGTAAATCGACGATCCTTCTCTATCTCTGCAACTATGTCTTCATCTACTAAGAA 209
Query 179 GGTTTTGATTCCCGTTGCGCATGGTACGGAGCCGTTTGAAGCGGTGGTGATGATCGATGT 238
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 210 GGTTTTGATTCCTGTTGCTCATGGTACGGAGCCGTTTGAAGCGGTGGTTATGATCGATGT 269
Query 239 GCTACGGCGAGGCGGAGCGGATGTTACGGTGGCGTCCGTTGAGAATCAGGTCGGCGTTGA 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 270 GCTACGGCGAGGCGGAGCGGATGTTACGGTGGCTTCCGTTGAGAATCAGGTCGGCGTTGA 329
Query 299 TGCTTGCCATGGAATCAAGATGGTCGCTGATACTCTTCTCTCTGAGATCACCGACTCCGT 358
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 330 TGCTTGCCATGGAATCAAAATGGTCGCTGATACTCTTCTCTCTGATATCACCGACTCGGT 389
Query 359 TTTCGACCTTATTATGCTCCCTGGAGGACTTCCGGGCGGTGAGACTCTTAAGAATTGTAA 418
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 390 TTTCGACCTTATTATGCTCCCTGGAGGACTTCCTGGTGGTGAGACTCTTAAGAATTGTAA 449
Query 419 ACCTTTAGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ACCTTTAGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTG 509
Query 479 TTGTGCGCCTGCGTTGGCGCTTGGTACTTGGGGTCTACTAGAGGGTAAAAAAGCTACATG 538
||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 510 TTGTGCGCCGGCGTTGGCGTTTGGTACTTGGGGACTACTAGAGGGTAAAAAAGCTACATG 569
Query 539 TTACCCGGTTTTTATGGAGAAACTAGCTGCTTGCGCGACAGCTGTTGAGTCAAGAGTGGA 598
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 570 TTACCCGGTTTTTATGGAGAAACTAGCGGCTTGTGCGACAGCTGTTGAGTCAAGAGTGGA 629
Query 599 AATTGATGGGAAGATAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCAC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AATTGATGGGAAGATAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCAC 689
Query 659 GCTTGTGGAGCAACTTCTTGGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GCTTGTGGAGCAACTTCTTGGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGAT 749
Query 719 GCGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAACTGGTCATT 778
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 750 GCGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAGCTGGTCATT 809
Query 779 CGACGGTACCCCACAGATTCTTGTACCCATTGCAGATGGCTCAGAGGAAATGGAAGCTGT 838
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 810 CGAGGGTACCCCACAGATTCTTGTACCCATTGCAGATGGCTCGGAGGAAATGGAAGCTGT 869
Query 839 TGCTATCATTGATGTCCTGAGGCGGGCAAAAGCAAATGTTGTCGTTGCTGCGCTTGGTAA 898
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 870 TGCTATCATTGATGTCCTGAAGCGGGCAAAAGCAAATGTTGTCGTAGCTGCGCTTGGTAA 929
Query 899 CAGTTTGGAAGTGGTAGCATCTCGGAAAGTCAAGCTGGTGGCAGATGTGCTTCTCGATGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 930 CAGTTTGGAAGTGGTAGCATCTCGGAAAGTCAAGCTGGTGGCAGATGTGCTTCTCGACGA 989
Query 959 GGCTGAAAAGAATTTGTACGATCTGATTGTGTTGCCTGGTGGTCTAGGTGGTGCTGAAGC 1018
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 990 GGCTGAAAAGAATTCGTACGATCTGATTGTGTTGCCTGGTGGTCTCGGCGGTGCTGAAGC 1049
Query 1019 ATTTGCAAGTTCGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 ATTTGCAAGTTCGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACC 1109
Query 1079 ATATGGAGCAATTTGTGCCTCTCCTGCTCTGGTGTTTGAGCCACATGGTTTACTCAAGGG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 ATATGGAGCAATTTGTGCCTCTCCTGCTCTGGTGTTTGAGCCACATGGTTTACTCAAGGG 1169
Query 1139 TAAGAAGGCAACAGCGTTCCCAGCAATGTGCAGCAAACTGACGGACCAGAGTCACATCGA 1198
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TAAGAAGGCAACAGCGTTTCCAGCAATGTGCAGCAAACTGACGGACCAGAGTCACATCGA 1229
Query 1199 GCATCGAGTCTTGGTGGACGGCAATCTCATAACAAGCAGGGGTCCAGGAACCTCATTGGA 1258
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1230 GCATCGAGTCTTGGTGGACGGCAATCTCATAACGAGCAGGGGTCCAGGAACCTCATTGGA 1289
Query 1259 GTTTGCGCTCGCAATTGTAGAGAAGTTTTACGGGCGTGAGAAAGGACTTCAGCTCGCAAA 1318
|||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1290 GTTTGCACTTGCAATTGTAGAGAAGTTTTACGGGCGCGAGAAAGGACTTCAGCTCTCAAA 1349
Query 1319 GGCAACACTTGTGTAAAATCATGAGTATCTTAGGTA 1354
||||||||||||||||| ||||||||||||||||||
Sbjct 1350 GGCAACACTTGTGTAAACTCATGAGTATCTTAGGTA 1385
> AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr3:5047400-5049877 FORWARD LENGTH=1545
Length=1545
Score = 1027 bits (556), Expect = 0.0
Identities = 1012/1228 (82%), Gaps = 47/1228 (4%)
Strand=Plus/Plus
Query 131 TCGACGATC-CTTCTCT-ATCTCTGCAACTATGTCTTCATCTGCTAAGAA-GGTTTTGAT 187
||||| ||| |||||| ||||| ||||||||| |||||| | | || || ||||||||
Sbjct 81 TCGACCATCGTTTCTCTAATCTCCGCAACTATGGCTTCATTTACGAA-AACGGTTTTGA- 138
Query 188 TCCC-GTTGCGCATGGTACGGAGCCGT-TTGAAGCGGTGGTGATGATCGA-TGTGCTACG 244
|||| ||||||| ||||||||||| | | |||||||||| |||||| | ||| | ||
Sbjct 139 TCCCTATTGCGCACGGTACGGAGCC-TCTAGAAGCGGTGGCGATGAT-TACCGTGTTGCG 196
Query 245 GCGAGGCGGAGCGGATGTTACGGTGGCGTCCGTTGAGAATCAGGTCGGCGTTGATGCTTG 304
||||| || || || || ||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 197 TCGAGGTGGTGCTGACGTGACGGTGGCGTCTGTTGAGACTCAGGTTGGCGTTGATGCTTG 256
Query 305 CCATGGAATCAAGATGGTCGCTGATACTCTTCTCTCTGAGATCACCGACTCCGTTTTCGA 364
||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 257 TCATGGCATCAAGATGGTCGCTGATACTCTTCTCTCTGATATTACCGACTCTGTTTTCGA 316
Query 365 CCTTATTATGCTCCCTGGAGGACTTCCGGGCGGTGAGACTCTTAAGAATTGTAAACCTTT 424
||||||| ||||||| ||||| ||||| || || ||||||||||| || |||||| ||||
Sbjct 317 CCTTATTGTGCTCCCCGGAGGGCTTCCCGGTGGCGAGACTCTTAAAAACTGTAAATCTTT 376
Query 425 AGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTGTTGTGC 484
|||||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| ||||||||
Sbjct 377 AGAGAACATGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGCAGCTATATGTTGTGC 436
Query 485 GCCTGCGTTGGCGCTTGGTACTTGGGGTCTACTAGAGGGTAAAAAAGCTACATGTTACCC 544
||||| ||||| ||||||||||||||||||||||| || || ||||| || |||||||
Sbjct 437 TCCTGCCTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCC 496
Query 545 GGTTTTTATGGAGAAACTAGCTGCT--T-GCGCGACAGCTGTTGAGTCAAGAGTGGAAAT 601
||||||||||||||||| || ||| | | || || |||||||||||||||||| ||||
Sbjct 497 TGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGAGTCAAGAGTGCAAAT 556
Query 602 TGATGGGAAGA-TAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCACGC 660
|||||| |||| ||||||||||| | || || ||||| ||||| |||||||| ||||||
Sbjct 557 TGATGG-AAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGAATTCTCCATCACGC 615
Query 661 TTGTGGAGCAACTTCTT-GGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGATG 719
|| | ||||| || || |||||||| ||||||| ||||||||| | |||| || |
Sbjct 616 TTATAGAGCAG-TTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAGTATCTTGCTGCTT 674
Query 720 CGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAA-CTGGTCATT 778
||||| ||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||
Sbjct 675 CGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAA-CAAACTGGTCATT 733
Query 779 CGACGGTACCCCACAGATTCTTGTACCCATTGCAGATG-GCTCAGAGGAAATGGAAGCTG 837
|| | ||| ||||||||||| |||||||||||||| | | ||||||||||| ||||||
Sbjct 734 TGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAG-TCAGAGGAAATTGAAGCTA 792
Query 838 TTGCTATCATTGATGTCCTGAGGCGGGCAAAAGCAAATGTTGTCG-TTGCTGC-GCTTGG 895
| || | | ||| ||||||||||||||||||||||||| || | ||||||| | ||||
Sbjct 793 TAGCGCTTGTAGATATCCTGAGGCGGGCAAAAGCAAATGTAGT-GATTGCTGCAG-TTGG 850
Query 896 TAACAGTTTGGAAGTGGTAGCATCTCGGAAAG-TCAAGCTGGTGGCAGATGTGCTTCTCG 954
||||||||||||||| | || |||||| |||| | ||||| || ||||| || ||||| |
Sbjct 851 TAACAGTTTGGAAGTTGAAGGATCTCGCAAAGCT-AAGCTAGTAGCAGAAGTTCTTCTTG 909
Query 955 ATGAGGCTGAAAAGAATTTGTACGATCTGATTGTGTTGCCTGGTGGTCT-AGGTGGTGCT 1013
|||||| || | |||| | || |||||||||||||| ||||| ||||| | ||||||
Sbjct 910 ATGAGGTTGCAGAGAAGTCGTTTGATCTGATTGTGTTACCTGGCGGTCTTAAC-GGTGCT 968
Query 1014 GAA-GCATTTGCAAGTT-CGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAA 1071
|| | ||| ||||| | || |||||||||| |||||||||| ||| ||||| ||| |||
Sbjct 969 CAAAG-ATTCGCAAGCTGCG-AGAAGCTAGTTAATATGTTAAGGAAACAGGCAGAAGCAA 1026
Query 1072 ACAAACCATATGGAGCAATTTGTGCCTCTCCTGCTCTG-GTGTTTGAGCC-ACATGGTTT 1129
||||||||||||||| ||| || || || |||||| | || || ||||| | |||||||
Sbjct 1027 ACAAACCATATGGAGGAATCTGCGCATCGCCTGCT-TACGTCTTCGAGCCTA-ATGGTTT 1084
Query 1130 ACTCAAGGGTAAGAAGGCAAC-AGCGTT-CCCAGCAATGTGC-AGCAAACTGACGGACCA 1186
|||||||||||||||||| || | | | ||||| || || | |||||| ||||| |
Sbjct 1085 ACTCAAGGGTAAGAAGGCTACTA-C-TCACCCAGTGGTGAGCGA-CAAACTTTCGGACAA 1141
Query 1187 GAGTCACATCGAGCATC-GAGTCTTGGTGGACGGCAATCTCATAACAAGCAGGGGTCCAG 1245
||||||||| ||||| | ||||| |||| || || ||| ||||||||||||| | |||||
Sbjct 1142 GAGTCACATTGAGCA-CAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAG 1200
Query 1246 GAACCT-CATTGGAGTTTGCGCTCGCAATTGTAGAGAAGTTTTACGGGCGTGAGAAAGGA 1304
| || | || |||||||| | || || ||||| || |||||||||||||| |||||||
Sbjct 1201 GGAC-TGCAATGGAGTTTTCACTTGCCATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCT 1259
Query 1305 CTTCAGCTCGCAAAGGCAACACTTGTGT 1332
|||||||||| |||||||||||||||||
Sbjct 1260 CTTCAGCTCGGAAAGGCAACACTTGTGT 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5