BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923876
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53300.1 | Symbols: TTL1 | tetratricopetide-repeat thioredox... 3105 0.0
> AT1G53300.1 | Symbols: TTL1 | tetratricopetide-repeat thioredoxin-like
1 | chr1:19879422-19882375 FORWARD LENGTH=2404
Length=2404
Score = 3105 bits (1681), Expect = 0.0
Identities = 1994/2136 (93%), Gaps = 57/2136 (3%)
Strand=Plus/Plus
Query 1 CTTTCTCTCGCCGGAATACTCAAAATGCCCAAGTCAGTTAAACCCATCTCTGAATCTGAC 60
||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CTTTCACTCACCACAACACTCAAAATGCCCAAGTCAGTTAAACCCATCTCTGAATCTGAC 340
Query 61 AAACTCTCCGATCATCTCCGCGATTCATCACTAACCTCCGAGATCAATAAACCTGATTTC 120
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 341 AAACTCTCCGATCATCTCCGTGATTCATCACTAACCTCCGAGATCAACAAACCTGATTTC 400
Query 121 CGTGAACTAGATCTTGGTTCACCGGTTTCTCCGCTTCGTTCTCAGCCACGTGG------- 173
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CGTGAGCTAGATCTTGGTTCACCGGTTTCTCCGCTTCGTTCTCAGCCACGTGGACTCACC 460
Query 174 ------AGT-C-ACTACAACCACTAGTAGTAGCAGTTCTAGCTCTTCCGGATCTCTTACG 225
| | | ||||||||||||||||| || ||||||||||||||||||||| | |||
Sbjct 461 ACCACCACTACTACTACAACCACTAGTAGCAGTAGTTCTAGCTCTTCCGGATCTGTAACG 520
Query 226 GGTCGGGTTAAACATGCTCCGGTCATCGGAAGATCTAATTCTCTTCGTAGTCAATCTGGT 285
|||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct 521 GGTCGGATTAAACATGCTCCGGTTATCGGAAGATCTAATTCTGTTCGTAGTCAATCTAAT 580
Query 286 TCATCTAGTGGGAATAATAATCTAAGACCGAGATCGGACTCAGCT---ACTTCTTCTTCT 342
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 581 TCGTCTAGTGGGAATAATAATCTAAGACCGAGATCGGACTCTGCTACAACTTCTTCTTCT 640
Query 343 TCCCATTCACAACCA--------CT--T-AT-CTCCTCTGCTAC-T-T----CTCC-A-G 382
|| |||||||||||| || | | |||||||||||| | | |||| | |
Sbjct 641 TCTCATTCACAACCACTTCTCTCCTCCTCCTCCTCCTCTGCTACTTCTCCAGCTCCGACG 700
Query 383 -CTCCGGCGAATGTACTTCCCACCGGAAACATTTGTCCTTCAGGGAAGATCCAAATCACT 441
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 701 TCTCCGGCGAATGTACTTCCCACCGGAAACATTTGTCCTTCTGGGAAGATCCAAATCACT 760
Query 442 GGAATGACACAAACCCGTTCAAGAAGCGATGTTCTTGGATCTGGTACTGGAACTTATGGA 501
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GGAATGACTCAAAGCCGTTCAAGAAGCGATGTTCTTGGATCTGGTACTGGAACTTATGGA 820
Query 502 CATGGAAGCATAATGCGAGGAGGTGGAGGAACTAGTATATCTCCGGCGAAACCTACC-AC 560
|||||||| ||||||||||||||| | ||||||||||||| ||||||||| ||
Sbjct 821 CATGGAAGTATAATGCGAGGAGGT----G-----GTATATCTCCGGCCAAACCTACCAAC 871
Query 561 GACCGGAGGAGGA-GGATCTCCGCCGGTAATTGTCGGTAGCTCTAGCAG-A--AGTAGTA 616
|||||||||||| | || ||||||||| ||||||||||||||| || | |||||||
Sbjct 872 -ACCGGAGGAGGATCCAACT-CGCCGGTAAATGTCGGTAGCTCTAGTAGAAGTAGTAGTA 929
Query 617 CTGTTGTTGCCGGAGAGACTCCTATATGGAAGAAAGCAG-TTTTAGGTTCGGATTCAGAG 675
|||||| | | |||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 930 CTGTTGCTACGGGAGAGACTCCTATATGGAAAAAAGC-GATTTTAGGTTCGGATTCAGAG 988
Query 676 GAAGTGAAGAGACTAGGAAATGAAATGTATAGGAAAGGTTTGTTTAATGAGGCTTTGAAG 735
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GAAGTGAAGAGAGTAGGGAATGAAATGTATAGGAAAGGTTTGTTTAATGAGGCTTTGAAG 1048
Query 736 TTGTATGATAGGGCAATAGCTTTATCGCCGACAAACGCTGCTTACCGGAGTAATCGAGCT 795
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1049 TTGTATGATAGAGCAATAGCTTTATCTCCGACTAACGCTGCTTACCGGAGTAATCGAGCT 1108
Query 796 GCCGCATTGACCGGTTTGGCTCGAATTGGTGAAGCTGTTATGGAATGTGAAGAAGCTGTG 855
|||||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 1109 GCCGCATTGATTGGTTTGTCTCGAATTGGTGAAGCTGTTAAGGAATGTGAAGATGCTGTT 1168
Query 856 AGATCGGATCCTAACTATGGAAGAGCTCATCACCGTTTGGCCTTATTGCTTATTAGATTA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AGATCGGATCCTAACTATGGAAGAGCTCATCACCGTTTGGCCTTATTGCTTATTAGATTA 1228
Query 916 GGTCAAGTTAATAGTGCAAGGAAGCATCTTTGTTTTCTTGGGAGACCATCAGATCCCATG 975
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GGTCAGGTTAATAGTGCAAGGAAGCATCTTTGTTTTCTTGGGAGACCATCAGATCCCATG 1288
Query 976 GAGTTGCAGAAGCTTGAAGCAGTGGAGAAACATTTGATTAAATGTGTAGATGCGCGAAGA 1035
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1289 GAGTTGCAGAAGCTTGAAGCAGTGGAGAAACATTTGATTAAATGTGTTGATGCGCGAAGA 1348
Query 1036 GTCAGTGATTGGAAAACAGTTTTGACGGAAGCAGATGCTGCTATTGTTTCTGGAGCCGAT 1095
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1349 GTCACTGATTGGAAAACAGTTTTGATAGAAGCAGATGCTGCTATTGTTTCTGGAGCTGAT 1408
Query 1096 TTTTCTCCTCAGCTATTTATGTGTAAAGTAGAAGCATTCTTGAAACTTCACCGGCTTGAT 1155
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 TTTTCTCCACAGCTATTTATGTGTAAAGTAGAAGCATTCTTGAAACTTCACCGGCTTGAT 1468
Query 1156 GATGCCCAATCAAAGCTATTAGAAGTTCCTAAAGTAGAGCCGTTCCCCGTATCTTGTTCG 1215
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1469 GATGCACAGTCAAAGCTATTAGAAGTTCCTAAAGTAGAGCCGTTCCCTGTATCTTGTTCG 1528
Query 1216 CAGACTCGGTTTTCTGGTATGGCTTGTGAAGCTTATACATATTTTGTCAAAGCTCAAATC 1275
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1529 CAGACTCGGTTTTCTGGTATGGCTTGTGAAGCTTATATATATTTTGTCAAAGCTCAAATC 1588
Query 1276 GAGATGGCGTTAGGAAGGTTTGAAAATGCAGTTATGGCTGCTGAGAAAGCTAGCCAAATC 1335
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 GAGATGGCTTTAGGAAGGTTTGAAAATGCAGTTATGGCTGCTGAGAAAGCTAGCCAAATC 1648
Query 1336 GATCCACGATGCAACGAAGTTGCTATGTTACATAATACTGTTACATTGGTTGCTAGGGCT 1395
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 GATCCAAGATGCAACGAAGTTGCTATGTTACATAATACTGTTACATTGGTTGCTAGGGCT 1708
Query 1396 CGTGCTCGTGGTAACGATCTTTATAAATCAGAAAGATACACTGAAGCTAGTTCAGCTTAT 1455
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1709 CGTGCTCGTGGCAATGATCTTTATAAATCAGAAAGATACACTGAAGCAAGTTCAGCTTAT 1768
Query 1456 GCAGAAGGCCTTAGGCTTGATCCTTGCAACGCTATCCTATATTGTAACCGGGCAGCGTGT 1515
|| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||
Sbjct 1769 GCTGAAGGCCTTAGGCTTGATCCTTGCAACGCTATTCTATATTGTAATCGAGCAGCTTGT 1828
Query 1516 TGGTTTAAACTTGGAATGTGGGAACGCTCTATTGAAGATTGTAACCAAGCGCTGCGTTAT 1575
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1829 TGGTTTAAACTTGGAATGTGGGAACGCTCGATTGAAGATTGTAACCAAGCGCTGCGTTAT 1888
Query 1576 CAACCATGTTACACAAAGCCACTTCTTCGGAGGGCTGCCTCAAATAGCAAGATGGAAAGA 1635
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1889 CAACCAAGTTACACAAAGCCACTTCTTCGGAGGGCTGCCTCAAATAGCAAGATGGAAAGA 1948
Query 1636 TGGGGAGCTGCAGTGAGTGATTACGAGGCCTTGATAAGAGAACTACCTCATGACAAGGAA 1695
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1949 TGGGGAGCTGCAGTGAGTGATTATGAGGCCTTGATAAGAGAACTTCCTCATGACAAGGAA 2008
Query 1696 GTTGCTGAATCTTTATTCCATGCTCAAGTTGCATTGAAGAAATCTCGTGGAGAAGAAGTT 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 GTTGCTGAATCTTTATTCCATGCTCAAGTTGCATTGAAGAAATCTCGTGGAGAAGAAGTT 2068
Query 1756 TTAAATATGGAATTTGGTGGTGATGTTGAGGAAGTTTATAGCCGTGAACAGTTTAAAACT 1815
|||||||||||||||||||| || || |||||| ||||||| | ||||||||||||| ||
Sbjct 2069 TTAAATATGGAATTTGGTGGCGAAGTAGAGGAAATTTATAGTCTTGAACAGTTTAAATCT 2128
Query 1816 GCCATTAATTTACCAGGAGTTTCGGTTATCCATTTCTCGACAGCTTCTGATCATCAATGC 1875
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2129 GCCATGAATTTACCAGGAGTTTCGGTTATCCATTTCTCGACAGCCTCTGATCATCAATGC 2188
Query 1876 AAGCAAATATCTCCATTTGTGGACTCGCTATGTACTCGGTATCCATCTATACACTTCCTC 1935
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 2189 AAGCAAATATCTCCATTCGTGGACTCGCTATGTACTCGTTACCCATCTATACACTTCCTC 2248
Query 1936 AAGGTGGATATCGATAAATGTCCTTCAATAGGTAATGCAGAGAATGTGAGGGTTGTACCG 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2249 AAGGTGGATATCGATAAATGTCCTTCAATAGGTAATGCAGAGAATGTGAGGGTTGTACCG 2308
Query 1996 ACAGTGAAGATATACAAGAACGGTAGTCGGGTAAAGGAGATTGTCTGTCCAAGCAAAGAA 2055
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2309 ACAGTGAAGATATACAAGAACGGTAGTCGGGTTAAGGAGATTGTCTGTCCAAGCAAAGAA 2368
Query 2056 GTGTTGGAGTACTCGGTGAGACACTATAGCGGTTAA 2091
||||||||||||||||||||||||||||||||||||
Sbjct 2369 GTGTTGGAGTACTCGGTGAGACACTATAGCGGTTAA 2404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104718336870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5