BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923879
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53320.1 | Symbols: AtTLP7, TLP7 | tubby like protein 7 | ch... 1842 0.0
> AT1G53320.1 | Symbols: AtTLP7, TLP7 | tubby like protein 7 |
chr1:19891014-19893504 REVERSE LENGTH=1438
Length=1438
Score = 1842 bits (997), Expect = 0.0
Identities = 1132/1194 (95%), Gaps = 22/1194 (2%)
Strand=Plus/Plus
Query 1 GAAACATCTCTCTCTTCAC-AAATGCCTTTGTCACGGTCCCTTCTTTCGCGGAGGATCTC 59
|||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 56 GAAACA--TCTCTCTTCACAAAATGCCTTTGTCACGGTCCCTCCTTTCGCGGAGGATCTC 113
Query 60 GAACTCGTTTAGGTTTCATCATCAGGGAGAGACGACGGCACCGGAATCC-GATTCGTACG 118
|||||| |||||| || ||||||||||||||| || | | ||| | || || || ||
Sbjct 114 GAACTCTTTTAGG-TT--TCATCAGGGAGAGACAAC-G-A-CGGCA-CCGGAATC---CG 163
Query 119 AATCGATTCCTCCGCCGTCGAATATGGCCGGTTC-T--TCATGGTCGGCGATGCTCCCTG 175
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 164 AATCGATTCCTCCGCCGTCGAATATGGCCGGTTCTTCGTCATGGTCGGCGATGCTCCCTG 223
Query 176 AGTTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAAGACCGTTGGCCTCAACGTA 235
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 224 AATTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAGGACCGTTGGCCTCAACGTC 283
Query 236 GAGATGTAGTTACTTGCGCTTGCGTCTCGAAGAAATGGAGAGAAATTACTCAGGATTTTG 295
| ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 284 GTGATGTAGTTACTTGCGCTTGCGTTTCTAAGAAATGGAGAGAAATCACTCACGATTTCG 343
Query 296 CTAGATCCTCTTCTCTTAACTCTGGCAAAATTACTTTCCCTTCTTGCCTCAAATTGCCAG 355
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CTAGAT-C-C-TCTCTTAACTCTGGCAAAATTACTTTCCCTTCTTGCCTCAAATTGCCAG 400
Query 356 GTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACCTTTT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 401 GTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACGTTTT 460
Query 416 ACTTGTATCTTGCTCTAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCAC 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 461 ACTTGTATCTTGCTCTAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCGC 520
Query 476 GGAGGTTCAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGATTTCT 535
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GGAGGTTTAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGATTTCT 580
Query 536 CTCAAGGAAGTAATGCCTACGTTGGAAAATTAAGATCAGATTTTCTTGGGACGAACTTTA 595
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 581 CTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGATCAGATTTTCTTGGGACCAACTTTA 640
Query 596 CGGTATATGATAGCCAACCGCCACATAACGGAGCAAAACCTTCTAATGGCAAAGCCAGTC 655
| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 641 CAGTATACGATAGCCAACCACCACACAACGGAGCAAAACCTTCAAATGGCAAAGCCAGTC 700
Query 656 GCAGATTTGCGTCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTC 715
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GCAGATTTGCATCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTC 760
Query 716 ATGTTTCTTATAAATTCAACCTTCTGAAATCAAGAGGTCCAAGAAGAATGATAAGCACAC 775
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 761 ATGTTTCTTATAAATTCAACCTTTTGAAATCAAGAGGTCCAAGAAGAATGGTAAGCACAC 820
Query 776 TCCGATGCCCATC-CTCATCACCATCATCATCATCCGCTGGACTCTCGTCCGACCAAAAG 834
||||||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 821 TCCGATGCCCATCAC-CATCACCTTCATCATCATCCGCTGGACTCTCGTCTGACCAAAAG 879
Query 835 CCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTCACAATA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 880 CCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTGACAATA 939
Query 895 CTAAAGAACAAAGCTCCTAGATGGCATGAGCACTTACAGTGCTGGTGTCTGAACTTCCAT 954
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 940 CTAAAGAACAAAGCTCCTAGATGGCACGAGCACTTGCAGTGCTGGTGTCTGAACTTCCAT 999
Query 955 GGACGAGTAACCGTTGCTTCAGTCAAGAACTTCCAGCTGGTTGCGACTGTTGACCAAAGT 1014
|||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1000 GGACGAGTTACTGTTGCTTCGGTCAAGAACTTTCAGCTGGTTGCGACCGTTGACCAAAGT 1059
Query 1015 CAACCGAGCGGTAAAGGCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGAT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CAACCGAGCGGTAAAGGCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGAT 1119
Query 1075 GACACTTTCACTATGGATTATAGACAGCCACTCTCTGCATTTCAGGCTTTTGCTATCTGT 1134
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1120 GACACTTTCACTATGGATTATAGACAGCCTCTCTCTGCATTTCAGGCTTTTGCTATCTGT 1179
Query 1135 CTCACAAGTTTCGGCACTAAACTTGCCTGCGAGTGAAACCCACCAAAAGGGAAC 1188
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1180 CTCACAAGTTTCGGCACTAAACTTGCCTGCGAGTGAAACCCAACAAAAGGCAAC 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5