BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923882
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53330.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2141 0.0
> AT1G53330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:19896027-19897442 FORWARD LENGTH=1416
Length=1416
Score = 2141 bits (1159), Expect = 0.0
Identities = 1334/1420 (94%), Gaps = 5/1420 (0%)
Strand=Plus/Plus
Query 21 ATGTCCGCCGTGAAATCTGTCTCTTCCTTCAGGCTCGCTTCTCTCCTCCGACGTGAGAAT 80
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGTCCGCCGTGAAATCTGTCTCTTCCTTCAGGCTCGCCTCTCTCCTCCGCCGTGAGAAT 60
Query 81 GATCCTTCCGCCGCAATTAAGCTTTTCCGAAACCCTGATCCAGAATCAACGAACCCGAAA 140
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GATCCTTCCGCCGCCATGAAGCTTTTCCGAAACCCTGATCCAGAATCAACGAACCCAAAA 120
Query 141 CGACCCTTTAGATACTCGCTTCTTTGCTACGATATCATCATCACGAAACTTGGTGGCTCC 200
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGCCCTTCAGATACTCGCTTCTTTGCTACGATATCATCATCACGAAACTTGGTGGCTCC 180
Query 201 AAGATGTTTGACGAGCTAGATCAGGTACTTCTCCAGCTCAAGACCGATACTCGGATCGTT 260
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 181 AAGATGTTTGACGAGCTAGATCAGGTACTTCTCCACCTCAAGACCGATACTCGTATCGTT 240
Query 261 CCTACAGAGATTCTGTTCTGCAATGTAATCAATTTCTTCGGTCGTGGAAGATTACCTAGT 320
|||||||||||| | || |||||||| ||||||||||| || ||||||| |||||| |||
Sbjct 241 CCTACAGAGATTATATTTTGCAATGTGATCAATTTCTTTGGCCGTGGAAAATTACCCAGT 300
Query 321 CGTGCACTCCACATGTTCGACGAAATGCCTCAATACCGTTGCCAACGCACTGTGAAATCC 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTGCACTCCACATGTTCGACGAAATGCCTCAATACCGTTGCCAACGCACTGTGAAATCT 360
Query 381 CTGAACTCTCTCTTGAACACACTTCTT-AAGTGCGGTGAGTTTGAGAAAATGAAGGAACG 439
|||||||||| |||| | ||| || |||||||||||||| |||||||||||||||||
Sbjct 361 TTGAACTCTCTGTTGAGTGCGCTT-TTAAAGTGCGGTGAGTTGGAGAAAATGAAGGAACG 419
Query 440 TCTTTCGAGTATTGATGAGTTTGGTAAGCCTGACGCTTGTACTTACAATATACTGATCCA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTTTCGAGTATTGATGAGTTTGGTAAGCCTGACGCTTGTACTTACAATATACTGATCCA 479
Query 500 TGGATGTTCTCAGAGAGGGTGTTTCGATGATGCTTTGAAGCTATTCGATGAAATGGTCAA 559
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TGGATGTTCTCAGAGCGGGTGTTTCGATGATGCCTTGAAGCTATTCGATGAAATGGTCAA 539
Query 560 GAAAAAAGTGAAGCCCACTGGAGTTACCTTTGGGACGTTGATTCACGGGTTGTGCAAGAA 619
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 540 GAAAAAAGTGAAGCCCACTGGTGTTACCTTTGGGACGTTGATTCACGGGTTGTGCAAGGA 599
Query 620 TTTGAGGGTGAAAGAAGCATTGAAGATGAAGCAAGATATGTTGAAAGTGTATGGAGTACG 679
|| ||||||||| |||||| ||||||||||||| |||||||| |||||||||||||| ||
Sbjct 600 TTCGAGGGTGAAGGAAGCACTGAAGATGAAGCACGATATGTTAAAAGTGTATGGAGTGCG 659
Query 680 TCCCACGGTTCACATTTATGCGTCATTGGTCAAAGCGCTTTGTCAAATTGGTGAATTGAG 739
||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 660 TCCCACGGTACACATTTATGCGTCGTTGATTAAAGCGCTTTGTCAAATTGGTGAATTGAG 719
Query 740 TTTTGCGTTTAAGCTAAAGGATGAGGCGTACGAAGGAAAGATTAAAGTAGACTCAGCTAT 799
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 TTTTGCGTTTAAGCTTAAGGATGAGGCGTACGAAGGAAAGATTAAAGTAGACGCAGCTAT 779
Query 800 ATACTCTACGTTGATTAGCTCGCTTATAAAAGCTGGAAGATCAAACGAGGTATCGAGGAT 859
||||||||||||||||||||| ||||||||||||||||| || || |||||||||| |||
Sbjct 780 ATACTCTACGTTGATTAGCTCACTTATAAAAGCTGGAAGGTCGAATGAGGTATCGATGAT 839
Query 860 CTTGGAAGAAATGAGTGAAAAAGGATGCAAACCCGACACAGTGACTTACAATGTACTGAT 919
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 840 TTTGGAAGAAATGAGTGAAAAAGGATGCAAACCTGATACAGTGACTTACAATGTACTAAT 899
Query 920 TAACGGGTTCTGTGTTGAGAATGATTCGGAATCAGCTTATCGAGTCTTGGATGAAATGGT 979
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 900 TAACGGGTTCTGTGTTGAGAATGATTCCGAATCAGCTAATCGAGTCTTGGATGAAATGGT 959
Query 980 TGAAAAGGGCTTGAAACCAGATGTTATAAGCTACAACATGATACTTGGTGTCTTGTTTAG 1039
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 TGAAAAGGGCTTGAAACCAGATGTTATAAGCTACAACATGATACTTGGTGTCTTTTTTAG 1019
Query 1040 AATCCAAAAATGGGAAGAAGCAACTTACTTGTTTGAAGATATGCCCAGAAGAGGTTGCAG 1099
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AATCAAAAAATGGGAAGAAGCTACTTACTTGTTTGAAGATATGCCCAGAAGAGGTTGCAG 1079
Query 1100 CCCTGATACCTTATCTTATAGAATAGTTTTCGATGGACTTTGCGAAGGTTTACAATTTGA 1159
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1080 CCCTGATACCTTATCGTATAGGATAGTTTTCGATGGGCTTTGCGAAGGTTTACAATTCGA 1139
Query 1160 AGAAGCTGCGGCTATCTTGGACGAAATGCTTTTCAAAGGTTATAAGCCTCGCAGGGACAG 1219
||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 AGAAGCTGCAGTTATCTTAGACGAAATGCTTTTCAAAGGTTATAAGCCTCGCAGGGATAG 1199
Query 1220 GCTAGAGAGATTTCTGCAAAAGCTATGTGAAAGTGGAAAGTTGGAGATTCTAAGTAAAGT 1279
||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1200 GCTAGAGGGATTTCTGCAAAAGCTATGTGAGAGTGGAAAGTTGGAGATTCTGAGTAAAGT 1259
Query 1280 TATCAGTAGTTTGCATAGAGGGAATGCTGATGATGCAAAGGTATGGTCGGTTATGATACC 1339
||| ||||| ||||||||||||| ||||| ||||||| | || |||||||||||||||||
Sbjct 1260 TATTAGTAGCTTGCATAGAGGGATTGCTGGTGATGCAGATGTGTGGTCGGTTATGATACC 1319
Query 1340 TACAACAATGTGCAAAGAACCCGTGATATCGGCGTCTCTTGATTTGTTGTTGAACACAGA 1399
||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1320 TACAA---TGTGCAAAGAACCCGTGATATCGGATTCTATTGATTTGTTGTTGAACACAGT 1376
Query 1400 AAAGGAAGATGGTCCTTTATCAGCAATGCCGCCGTGCTAG 1439
|||||||||||||||||||||||||||||| | ||||||
Sbjct 1377 AAAGGAAGATGGTCCTTTATCAGCAATGCCACAATGCTAG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5