BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923885 Length=1024 Score E Sequences producing significant alignments: (Bits) Value AT1G53360.1 | Symbols: | F-box associated ubiquitination effec... 761 0.0 AT1G53370.1 | Symbols: | F-box and associated interaction doma... 182 8e-45 AT1G53790.2 | Symbols: | F-box and associated interaction doma... 67.6 2e-10 > AT1G53360.1 | Symbols: | F-box associated ubiquitination effector family protein | chr1:19907517-19908548 FORWARD LENGTH=1032 Length=1032 Score = 761 bits (412), Expect = 0.0 Identities = 623/721 (86%), Gaps = 29/721 (4%) Strand=Plus/Plus Query 21 ATGTTCTCTAGAGTCCCGGGAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATA 80 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTTTCTAGAGTCCCGGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATT 60 Query 81 CTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGTGTCTCATCCACGGCTC 140 | | ||| || ||||||||| ||||||| ||| ||||||||| |||||| |||||||||| Sbjct 61 CATCGTCGTCCTGATGTCACAGAGCAGTCCCTGACTAAGTCTATGTCTCGTCCACGGCTC 120 Query 141 TTGTTTTCCTTGGAA-TATACTGAAA-AGTTCTTGGTTTTCTCTTCACCTCAACCTCAAA 198 |||||| |||||||| | || | ||| | || ||| |||||||||||||||||||||||| Sbjct 121 TTGTTTGCCTTGGAAGT-TAAT-AAAGATTTATTGTTTTTCTCTTCACCTCAACCTCAAA 178 Query 199 AACCAGATGAGAACTCTTCTCTTGTAGCCACCCCTTATAAGTGTTTTCCCAAATATTTTC 258 | ||| |||| ||||||||||||||||||||||| |||||| ||||||| |||||||| | Sbjct 179 ATCCATATGATAACTCTTCTCTTGTAGCCACCCCATATAAGCGTTTTCCGAAATATTTGC 238 Query 259 CAACCAGAGTATCTACCGCCCTAGGTGGATTGGTATTCCTTCAGAATTTGG-GAAGaaaa 317 |||||||| | | ||| | || ||||||||||| ||||||||||| ||| ||||||| Sbjct 239 CAACCAGAATCTGTACAACGCTCGGTGGATTGGTCTTCCTTCAGAA-ATGGCTAAGAAAA 297 Query 318 aaaCCGCGGGTGATATGCAACCCCGTCACG-GGAGAGTCTATAACCTTACCCAAAGTGAA 376 ||| |||||||||| || ||||| |||| | ||||| | ||||||||||||||||||||| Sbjct 298 AAAACGCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAACCTTACCCAAAGTGAA 356 Query 377 AACGACTGGTGTTGGAGATAA-CTATTTTGGCTTTGATCCCATCAGCAAACAGTTTAAGG 435 | | |||||||||||||| || |||||||||||||||||| |||| ||||||||| || | Sbjct 357 AGCCACTGGTGTTGGAGA-AAGCTATTTTGGCTTTGATCCGATCACCAAACAGTTCAAAG 415 Query 436 TGTTGTGTATGACTTGGTCACGTTATGGAACACCCAATACTCATC-GGATTTTGACATTG 494 ||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct 416 TGTTGTGTATGACGTGGTCACGTTATGGAACACCCAATACTCACCAGG-TTTTGACATTG 474 Query 495 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGACCCAGTATCT-CCCCATTATTCTTG 553 ||||||||||||||||||||||||||||||||||| ||| || || ||||||||| | | Sbjct 475 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATA-CTTCCCCATTAT-CGTA 532 Query 554 GTAT-GATGGAATATGCATAAATGGCGTTTTGTATTACGTAGCtttttttAAAGAATCTC 612 || | ||| |||||||||||||||| |||||||| |||| |||| |||| ||||||||| Sbjct 533 GTTTTGATAGAATATGCATAAATGGTGTTTTGTACTACGGAGCTGATTTTGAAGAATCTC 592 Query 613 GACGATCTTATAAGATAGTTTGCTTCGACTTTAAGATTGAGAAATTCAGCTTTATTAA-A 671 | ||||| ||||||||||||||||||||||| | |||||||||||||||||||||| | Sbjct 593 -A--ATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCAGCTTTATTAACA 649 Query 672 TTAGAT-A--AAGACATGGTACGTGGTGAG--A-AGTTG-ACTTTGTTCAACTACAAAGG 724 | || | | ||| |||| | ||||| ||| | | || |||||||||||||||||||| Sbjct 650 T-AGCTGATGAAGGCATGTTCCGTGG-GAGTTATAAATGGACTTTGTTCAACTACAAAGG 707 Query 725 T 725 | Sbjct 708 T 708 > AT1G53370.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:19910516-19911646 FORWARD LENGTH=1068 Length=1068 Score = 182 bits (98), Expect = 8e-45 Identities = 216/270 (80%), Gaps = 20/270 (7%) Strand=Plus/Plus Query 739 ATGCTGGAAAACGTATATGGTCCAAAAGTATATGCATACTCCCA-CCTATAG--TCC-AC 794 |||||| ||||| || |||||||||||||||||||||| | ||| || ||| ||| Sbjct 815 ATGCTGAAAAACATAAATGGTCCAAAAGTATATGCATATTGCCATCC-GTAGTCTCCGGG 873 Query 795 AACTGCCTGATTGTTGGAATGACGGGTACGGGAGATATTGTGTTTTCGCCGTTCGCGGGC 854 || | |||||||| ||| || |||||||||| |||||||||||||| | || |||| Sbjct 874 AAAAG---GATTGTTGAAATTACTTGTACGGGAGAGATTGTGTTTTCGCCATCCGGGGGC 930 Query 855 GATCTATCAATCCCTTTCTACATTTTCTTCTACAATATCGAGAGCAAGACTTGTACAAGA 914 |||| | | ||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 931 TCTCTA-C-A-CCCTTTCTACATTTTCTTCTACAATATCGAGAGAAAGACTTATACAAGA 987 Query 915 GTCCATATTAAGGGATTTGAAGAGTTTAAGCATCAATTTACTTTCGTTCACATATTTCTA 974 ||||| || ||||||||| || ||| | || | | || | ||| ||| | |||||| Sbjct 988 GTCCAAATCAAGGGATTTAAAAAGTAT--GC-TGA-TTG-CGTTCA--CAC-T-TTTCTA 1038 Query 975 GACTTTGTAGAGGATATGAAGTTTATGTAA 1004 |||||||||||||||| |||||| || ||| Sbjct 1039 GACTTTGTAGAGGATACGAAGTTGATTTAA 1068 Score = 148 bits (80), Expect = 8e-35 Identities = 187/236 (79%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 67 TATCGGAATCCATACTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGT-G 125 ||| ||||||||||||| || || |||| ||||||||| || ||| ||||| ||||| | Sbjct 161 TATGGGAATCCATACTTCGTGGTCCTGATTTCACGGAGCTGTACCTGACTAAATCTGTAG 220 Query 126 TCTCATCCACGGCTCTTGTTT-TCCTTGGAA-TATACTGA-AAAGTTCTTGGTTTTCTCT 182 ||| || | ||||||| ||| || | || | || | | | |||| |||||||||||| Sbjct 221 -CTCTTCGAAGGCTCTT-TTTCGCCCTCAAAGT-TAAT-ACAGAGTTATTGGTTTTCTCT 276 Query 183 TCACCTCAACCTCAAAAACCAGATGAGAACTCTTCTCTTGTAG------CCACCCCTTAT 236 |||||||||||||||| ||||||||||||||||||||||||| |||| |||||| Sbjct 277 TCACCTCAACCTCAAATTCCAGATGAGAACTCTTCTCTTGTAGTTGAAGCCACTCCTTAT 336 Query 237 AAGTGTTTTCCCAAATATTTTCCAACCAGAGTATCT--ACCGCCCTAGGTGGATTG 290 ||||||||||||||| | ||||||| || |||| ||||| || ||||| ||| Sbjct 337 AAGTGTTTTCCCAAAAAAATTCCAACT-GAA-ATCTGCACCGCGCTCGGTGGCTTG 390 > AT1G53790.2 | Symbols: | F-box and associated interaction domains-containing protein | chr1:20079081-20081455 REVERSE LENGTH=1852 Length=1852 Score = 67.6 bits (36), Expect = 2e-10 Identities = 175/237 (74%), Gaps = 29/237 (12%) Strand=Plus/Plus Query 30 AGAGTCCCGGGAAAGTCTATAGCTAGGTTTCGTTGCGTATC--------GG-AATCCATA 80 ||||| || | |||||||||||||||||||||||||||||| || |||||||| Sbjct 338 AGAGTTCCTGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCCAAACTCTGGGAATCCATA 397 Query 81 CTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGT-G-TCTCATCCACGGC 138 ||| ||| || |||| ||| |||| |||| | |||| |||| | | | || ||||| | Sbjct 398 CTTTGTCGTCCTGATTTCAAGGAGTTGTTCATGACTATGTCT-TCGAT-TCGTCCACCGT 455 Query 139 T-CTTGTTTTC-C-TTGGAATAT-ACTGAA---AAGTTCTTGGTT-TTCTCTTCACCTCA 190 | ||| ||||| | || || || | ||| || || || || |||||||||||||| Sbjct 456 TGCTTCTTTTCACCTTCCAAGATGA-TGATGGCAATTTGTTC-TTCTTCTCTTCACCTCA 513 Query 191 ACCTCAAAAACCA-G-AT-GAGAACT-CTTCTCTTGTAGCCACCCCTTATAAGTGTT 243 ||||| | ||| | | ||||| | | ||||||||| |||||| |||| | |||| Sbjct 514 CCCTCAGATTCCATGTAACGAGAA-TACGTCTCTTGTACCCACCCGTTATCA-TGTT 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50183912853 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5