BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923885
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53360.1 | Symbols: | F-box associated ubiquitination effec... 761 0.0
AT1G53370.1 | Symbols: | F-box and associated interaction doma... 182 8e-45
AT1G53790.2 | Symbols: | F-box and associated interaction doma... 67.6 2e-10
> AT1G53360.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:19907517-19908548 FORWARD LENGTH=1032
Length=1032
Score = 761 bits (412), Expect = 0.0
Identities = 623/721 (86%), Gaps = 29/721 (4%)
Strand=Plus/Plus
Query 21 ATGTTCTCTAGAGTCCCGGGAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATA 80
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTTCTAGAGTCCCGGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATT 60
Query 81 CTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGTGTCTCATCCACGGCTC 140
| | ||| || ||||||||| ||||||| ||| ||||||||| |||||| ||||||||||
Sbjct 61 CATCGTCGTCCTGATGTCACAGAGCAGTCCCTGACTAAGTCTATGTCTCGTCCACGGCTC 120
Query 141 TTGTTTTCCTTGGAA-TATACTGAAA-AGTTCTTGGTTTTCTCTTCACCTCAACCTCAAA 198
|||||| |||||||| | || | ||| | || ||| ||||||||||||||||||||||||
Sbjct 121 TTGTTTGCCTTGGAAGT-TAAT-AAAGATTTATTGTTTTTCTCTTCACCTCAACCTCAAA 178
Query 199 AACCAGATGAGAACTCTTCTCTTGTAGCCACCCCTTATAAGTGTTTTCCCAAATATTTTC 258
| ||| |||| ||||||||||||||||||||||| |||||| ||||||| |||||||| |
Sbjct 179 ATCCATATGATAACTCTTCTCTTGTAGCCACCCCATATAAGCGTTTTCCGAAATATTTGC 238
Query 259 CAACCAGAGTATCTACCGCCCTAGGTGGATTGGTATTCCTTCAGAATTTGG-GAAGaaaa 317
|||||||| | | ||| | || ||||||||||| ||||||||||| ||| |||||||
Sbjct 239 CAACCAGAATCTGTACAACGCTCGGTGGATTGGTCTTCCTTCAGAA-ATGGCTAAGAAAA 297
Query 318 aaaCCGCGGGTGATATGCAACCCCGTCACG-GGAGAGTCTATAACCTTACCCAAAGTGAA 376
||| |||||||||| || ||||| |||| | ||||| | |||||||||||||||||||||
Sbjct 298 AAAACGCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAACCTTACCCAAAGTGAA 356
Query 377 AACGACTGGTGTTGGAGATAA-CTATTTTGGCTTTGATCCCATCAGCAAACAGTTTAAGG 435
| | |||||||||||||| || |||||||||||||||||| |||| ||||||||| || |
Sbjct 357 AGCCACTGGTGTTGGAGA-AAGCTATTTTGGCTTTGATCCGATCACCAAACAGTTCAAAG 415
Query 436 TGTTGTGTATGACTTGGTCACGTTATGGAACACCCAATACTCATC-GGATTTTGACATTG 494
||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 416 TGTTGTGTATGACGTGGTCACGTTATGGAACACCCAATACTCACCAGG-TTTTGACATTG 474
Query 495 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGACCCAGTATCT-CCCCATTATTCTTG 553
||||||||||||||||||||||||||||||||||| ||| || || ||||||||| | |
Sbjct 475 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATA-CTTCCCCATTAT-CGTA 532
Query 554 GTAT-GATGGAATATGCATAAATGGCGTTTTGTATTACGTAGCtttttttAAAGAATCTC 612
|| | ||| |||||||||||||||| |||||||| |||| |||| |||| |||||||||
Sbjct 533 GTTTTGATAGAATATGCATAAATGGTGTTTTGTACTACGGAGCTGATTTTGAAGAATCTC 592
Query 613 GACGATCTTATAAGATAGTTTGCTTCGACTTTAAGATTGAGAAATTCAGCTTTATTAA-A 671
| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 593 -A--ATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCAGCTTTATTAACA 649
Query 672 TTAGAT-A--AAGACATGGTACGTGGTGAG--A-AGTTG-ACTTTGTTCAACTACAAAGG 724
| || | | ||| |||| | ||||| ||| | | || ||||||||||||||||||||
Sbjct 650 T-AGCTGATGAAGGCATGTTCCGTGG-GAGTTATAAATGGACTTTGTTCAACTACAAAGG 707
Query 725 T 725
|
Sbjct 708 T 708
> AT1G53370.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:19910516-19911646 FORWARD LENGTH=1068
Length=1068
Score = 182 bits (98), Expect = 8e-45
Identities = 216/270 (80%), Gaps = 20/270 (7%)
Strand=Plus/Plus
Query 739 ATGCTGGAAAACGTATATGGTCCAAAAGTATATGCATACTCCCA-CCTATAG--TCC-AC 794
|||||| ||||| || |||||||||||||||||||||| | ||| || ||| |||
Sbjct 815 ATGCTGAAAAACATAAATGGTCCAAAAGTATATGCATATTGCCATCC-GTAGTCTCCGGG 873
Query 795 AACTGCCTGATTGTTGGAATGACGGGTACGGGAGATATTGTGTTTTCGCCGTTCGCGGGC 854
|| | |||||||| ||| || |||||||||| |||||||||||||| | || ||||
Sbjct 874 AAAAG---GATTGTTGAAATTACTTGTACGGGAGAGATTGTGTTTTCGCCATCCGGGGGC 930
Query 855 GATCTATCAATCCCTTTCTACATTTTCTTCTACAATATCGAGAGCAAGACTTGTACAAGA 914
|||| | | ||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 931 TCTCTA-C-A-CCCTTTCTACATTTTCTTCTACAATATCGAGAGAAAGACTTATACAAGA 987
Query 915 GTCCATATTAAGGGATTTGAAGAGTTTAAGCATCAATTTACTTTCGTTCACATATTTCTA 974
||||| || ||||||||| || ||| | || | | || | ||| ||| | ||||||
Sbjct 988 GTCCAAATCAAGGGATTTAAAAAGTAT--GC-TGA-TTG-CGTTCA--CAC-T-TTTCTA 1038
Query 975 GACTTTGTAGAGGATATGAAGTTTATGTAA 1004
|||||||||||||||| |||||| || |||
Sbjct 1039 GACTTTGTAGAGGATACGAAGTTGATTTAA 1068
Score = 148 bits (80), Expect = 8e-35
Identities = 187/236 (79%), Gaps = 18/236 (8%)
Strand=Plus/Plus
Query 67 TATCGGAATCCATACTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGT-G 125
||| ||||||||||||| || || |||| ||||||||| || ||| ||||| ||||| |
Sbjct 161 TATGGGAATCCATACTTCGTGGTCCTGATTTCACGGAGCTGTACCTGACTAAATCTGTAG 220
Query 126 TCTCATCCACGGCTCTTGTTT-TCCTTGGAA-TATACTGA-AAAGTTCTTGGTTTTCTCT 182
||| || | ||||||| ||| || | || | || | | | |||| ||||||||||||
Sbjct 221 -CTCTTCGAAGGCTCTT-TTTCGCCCTCAAAGT-TAAT-ACAGAGTTATTGGTTTTCTCT 276
Query 183 TCACCTCAACCTCAAAAACCAGATGAGAACTCTTCTCTTGTAG------CCACCCCTTAT 236
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||
Sbjct 277 TCACCTCAACCTCAAATTCCAGATGAGAACTCTTCTCTTGTAGTTGAAGCCACTCCTTAT 336
Query 237 AAGTGTTTTCCCAAATATTTTCCAACCAGAGTATCT--ACCGCCCTAGGTGGATTG 290
||||||||||||||| | ||||||| || |||| ||||| || ||||| |||
Sbjct 337 AAGTGTTTTCCCAAAAAAATTCCAACT-GAA-ATCTGCACCGCGCTCGGTGGCTTG 390
> AT1G53790.2 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20079081-20081455 REVERSE LENGTH=1852
Length=1852
Score = 67.6 bits (36), Expect = 2e-10
Identities = 175/237 (74%), Gaps = 29/237 (12%)
Strand=Plus/Plus
Query 30 AGAGTCCCGGGAAAGTCTATAGCTAGGTTTCGTTGCGTATC--------GG-AATCCATA 80
||||| || | |||||||||||||||||||||||||||||| || ||||||||
Sbjct 338 AGAGTTCCTGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCCAAACTCTGGGAATCCATA 397
Query 81 CTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGT-G-TCTCATCCACGGC 138
||| ||| || |||| ||| |||| |||| | |||| |||| | | | || ||||| |
Sbjct 398 CTTTGTCGTCCTGATTTCAAGGAGTTGTTCATGACTATGTCT-TCGAT-TCGTCCACCGT 455
Query 139 T-CTTGTTTTC-C-TTGGAATAT-ACTGAA---AAGTTCTTGGTT-TTCTCTTCACCTCA 190
| ||| ||||| | || || || | ||| || || || || ||||||||||||||
Sbjct 456 TGCTTCTTTTCACCTTCCAAGATGA-TGATGGCAATTTGTTC-TTCTTCTCTTCACCTCA 513
Query 191 ACCTCAAAAACCA-G-AT-GAGAACT-CTTCTCTTGTAGCCACCCCTTATAAGTGTT 243
||||| | ||| | | ||||| | | ||||||||| |||||| |||| | ||||
Sbjct 514 CCCTCAGATTCCATGTAACGAGAA-TACGTCTCTTGTACCCACCCGTTATCA-TGTT 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5