BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923888

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr...   219    1e-56


> AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr1:28811685-28813070 
REVERSE LENGTH=829
Length=829

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 134/141 (95%), Gaps = 3/141 (2%)
 Strand=Plus/Plus

Query  81   CCGTCGCTGAATTCGAAAGAATCGTTTA-GTGTTTCTGCTTTCGCTTCTCGTTCTATCTC  139
            |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct  156  CCGTCGCTGAATTCGAAAGAATCG-TCAGGTGTTTCTGCTTTCGCTTCTCGTTCTATCTC  214

Query  140  GGCCGTCAAATTTCAGTTTCCTGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCCTC  199
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  215  GGCCGTCAAATTTCAGTTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCATC  274

Query  200  TTTATCTTCAACGGCTCTGAT  220
            ||||||||||||| ||| |||
Sbjct  275  TTTATCTTCAACGACTC-GAT  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5