BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923888 Length=259 Score E Sequences producing significant alignments: (Bits) Value AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr... 219 1e-56 > AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr1:28811685-28813070 REVERSE LENGTH=829 Length=829 Score = 219 bits (118), Expect = 1e-56 Identities = 134/141 (95%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 81 CCGTCGCTGAATTCGAAAGAATCGTTTA-GTGTTTCTGCTTTCGCTTCTCGTTCTATCTC 139 |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 156 CCGTCGCTGAATTCGAAAGAATCG-TCAGGTGTTTCTGCTTTCGCTTCTCGTTCTATCTC 214 Query 140 GGCCGTCAAATTTCAGTTTCCTGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCCTC 199 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 215 GGCCGTCAAATTTCAGTTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCATC 274 Query 200 TTTATCTTCAACGGCTCTGAT 220 ||||||||||||| ||| ||| Sbjct 275 TTTATCTTCAACGACTC-GAT 294 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11812921015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5