BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923905
Length=547
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53530.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 843 0.0
> AT1G53530.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:19978146-19980084 FORWARD LENGTH=916
Length=916
Score = 843 bits (456), Expect = 0.0
Identities = 511/538 (95%), Gaps = 2/538 (0%)
Strand=Plus/Plus
Query 12 GAGAGAGAGATGAGTATGAGATTGTTGAGTTTTCTGAAGCAATGGCGTGGAACAGCGAAA 71
|||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct 95 GAGAGAGAGATGAGAATGACATTTTTGAGTTATCTGAAGCAATGGCGTGGAACAGCGAAA 154
Query 72 GAAGCGTTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACTGAT 131
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 155 GAAGCATTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACCGAT 214
Query 132 CGTTACATAATCTCCACGACTCACGTTCACGGACCGAGCATGCTTCCGACGCTTAATCTA 191
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 215 CGATACATAATCTCCACGACCCACGTTCACGGGCCGAGCATGCTTCCGACGCTTAATCTA 274
Query 192 ACCGGCGATGTAATTTTGGCGGAACATTTATCACATCGGTTTGGTAAGATTGGGCTCGGT 251
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 275 ACCGGCGATGTAATATTGGCGGAACATTTATCACACCGGTTTGGTAAGATTGGACTCGGT 334
Query 252 GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAACAGGATGGTGACAAAGCGAATCTTG 311
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 335 GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAAAAGGATGGTGACAAAGCGAATCTTG 394
Query 312 GGTTTAGAAGGCGATAGACTCACTTTCTCTGCTGACCCATTGGTCGGTGATGCCTCGGTC 371
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 395 GGTTTAGAAGGCGATAGACTCACTTTTTCTGCTGACCCATTGGTCGGTGATGCTTCAGTG 454
Query 372 AGCGTTTTGGTTCCAAAAGGTCATGTTTGGATTCAGGGAGATAACTTATATGCTTCAACG 431
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 455 AGCGTTTTGGTTCCGAAAGGTCATGTTTGGATTCAGGGAGATAACTTGTATGCTTCAACT 514
Query 432 GATTCACGTCATTTTGGACCTATACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTTCGG 491
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 515 GATTCACGTCATTTTGGGCCTGTACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTACGG 574
Query 492 GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATCAGATACA--TACACATT 547
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 575 GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATTATATACACATACACATT 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26222224734
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5