BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923911
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-... 691 0.0
AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 60.2 4e-08
> AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-19984637
FORWARD LENGTH=1227
Length=1227
Score = 691 bits (374), Expect = 0.0
Identities = 623/734 (85%), Gaps = 53/734 (7%)
Strand=Plus/Plus
Query 448 TGAATTCAGAGACGAGAATTGGAAAAGTAAGTTATTCTTTTGGGTATGATCCGATCGACA 507
||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct 503 TGAATTCAGAGACGATAATTGAAAAAGTAAGATATTCTTTTGGGTATGATCCGATTGACA 562
Query 508 AACAATTCAAGGTATTGCGTATCACATTGTTGCCTAG-GGACTCACAGTG-GTGGTATAG 565
||||||||||||||||||||||||||| ||||| ||| || |||||| | ||||| |||
Sbjct 563 AACAATTCAAGGTATTGCGTATCACATGGTTGCATAGAGG-CTCACA-CGAGTGGTCTAG 620
Query 566 TGAGTATCAAGTTCTGACATTAGGGCTTGGAAATCTTTCATGGAGAAAGATC-CAATGTT 624
||||||||||||||||||||||||| |||||||| ||||||||||||| | | |||||||
Sbjct 621 TGAGTATCAAGTTCTGACATTAGGGTTTGGAAATATTTCATGGAGAAATA-CTCAATGTT 679
Query 625 GCACACCTCATTATATTCTAGAAGATTA-TGGTATATGCATCAATGGTGTTTTGTATTAT 683
|| | ||||||| | || ||||| || |||||||||||||||||||||||||||||||
Sbjct 680 GCGTAGTTCATTATCTACTTGAAGA-TAGTGGTATATGCATCAATGGTGTTTTGTATTAT 738
Query 684 CCCGCAAGGCTTAATACCGGAAAATCTACCATGGTTTGCTTTAATGTTAGGTCTGAAAAA 743
|| || ||||| ||| | |||||| |||||| ||||||||| |||||| | ||||||||
Sbjct 739 CCAGCTAGGCTCGATAACAGAAAATATACCATTGTTTGCTTTGATGTTATGACTGAAAAA 798
Query 744 TTCAGTTTTACT-GATATTGATAAAGACGTGTCAATAGTGACCTATCTCT-TTGTTAGTG 801
|||||||||||| | ||||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 799 TTCAGTTTTACTAG-TATTGATAAAGACATGACAATAATGACCAATCTCAGTT-TTAGTC 856
Query 802 TCATCGACTACAATGGTAAGTTAGGTGTTTGTATTTCTGATCAT-CTCCATAATTTTGAG 860
||||||||||||| ||||||||||||| |||||||| |||||| ||| | |||||||
Sbjct 857 TCATCGACTACAAGGGTAAGTTAGGTGCTTGTATTTGTGATCACACTC--T--TTTTGAG 912
Query 861 TTGTGGGTTTTAGAGAATGCGGAGGAACATAAATGGTCAAAGCATATCTACAAAATGCC- 919
||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 913 TTGTGGGTTTTAGAGAACGCGGAGGAACATAAATGGTCAAAGAATATCTACAACATGCCC 972
Query 920 -A--CAT--T------TGG-G----CG---T-CTTAGAATGTGCTGGAATGATTGCAAGT 959
| || | ||| | || | |||| |||||||||||||||||||||||
Sbjct 973 TATTCACGATCACGGCTGGAGGAAACGAGCTACTTAAAATGTGCTGGAATGATTGCAAGT 1032
Query 960 GGTGAAATTGTGTTGTACCCAAGATTTAGTGCT--------TA-T-A--CAAGATATCCT 1007
||||||||| |||||||||||| | ||||||| || | | |||| ||||||
Sbjct 1033 GGTGAAATTTTGTTGTACCCAATCTCTAGTGCTAACACAAGTACTGATGCAAGGTATCCT 1092
Query 1008 TTCCTCTACTTCTACAATCTGGAGAGGAACATTATTACAAGAGTAACACTTCAAGTTCCA 1067
||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1093 TTCATCTACTACTACAATCTCGAGAGGAACATTATTACAAGAGTAACACTTCAAGTACCA 1152
Query 1068 ATACGTAAACAGTTAACTTATGGTAGATT-TT--ACACATTTTCAAATTTTGTAGAGGAT 1124
|||| ||||||||| ||||||| |||||| || ||||||||||||||||| ||||| ||
Sbjct 1153 ATACTTAAACAGTTTACTTATGCTAGATTATTTTACACATTTTCAAATTTTTTAGAGAAT 1212
Query 1125 GTGACGCTTATCTA 1138
||||||||||||||
Sbjct 1213 GTGACGCTTATCTA 1226
Score = 527 bits (285), Expect = 1e-148
Identities = 380/425 (89%), Gaps = 10/425 (2%)
Strand=Plus/Plus
Query 21 ATGAGAAAACATGAGCAGCAAG-TCATCGAGGATGACCTAACCGTAGCCGGATCCAATAA 79
|||||||||| | ||||||||| | | | | ||| |||| | |||| || ||||||||||
Sbjct 1 ATGAGAAAACGTAAGCAGCAAGTTTA-CAACGATAACCTTATCGTATCCAGATCCAATAA 59
Query 80 ACGATCTTCAACATCTGGAGAA-GAAACATGTTACTCTGATCCAATTCCCGTTGATCTCG 138
||||||||||||||||||| || ||||| || |||| |||||| ||||||||||||||||
Sbjct 60 ACGATCTTCAACATCTGGA-AAGGAAACGTGCTACTTTGATCCGATTCCCGTTGATCTCG 118
Query 139 TCATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATTGCAAGGTGTCGTTGTGTATCGA 198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 TCATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATAGCAAGGTGTCGTTGTGTATCGA 178
Query 199 AACTGTGGTCGTCCATAATCCGCCGTCCAAATTACAACCTGTTGTTCCCGCTCAAGTCTC 258
||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct 179 AACTGTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTTGTTCCCGGTCAAGTCTT 238
Query 259 CGGCTACACCGCGGCTTCTTTTCGTCTTCAAAGTTCCAGGAGAGTTGTTATTCAACGCTT 318
||||||||||||| ||||||||||||||||||||| || |||||||||| |||||| |||
Sbjct 239 CGGCTACACCGCGTCTTCTTTTCGTCTTCAAAGTTGCACGAGAGTTGTTTTTCAACTCTT 298
Query 319 CACCTCAGCATTTCAATCCGGATAGGCACTCGTCTCTTGTAGCCACCTCTCTTCAGAAGA 378
|||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 299 CACCTCAGCATTTCAATCCGAATA---ACTCGTCTCTTGTCGCCACTTCTCTTCAGAAGA 355
Query 379 CTACTTGTAACACAAGTTTCTTTCAATTATGTCGCCCTGTCCACGGACTGGTATGTTGTC 438
|| || | |||||| |||| |||||||||||| |||||||| |||||| ||||| |||
Sbjct 356 CTTCTAG---CACAAGATTCTCTCAATTATGTCGTCCTGTCCATGGACTGATATGTAGTC 412
Query 439 AGCAT 443
|||||
Sbjct 413 AGCAT 417
> AT2G31470.1 | Symbols: DOR | F-box and associated interaction
domains-containing protein | chr2:13407492-13408655 REVERSE
LENGTH=1164
Length=1164
Score = 60.2 bits (32), Expect = 4e-08
Identities = 161/218 (74%), Gaps = 30/218 (14%)
Strand=Plus/Plus
Query 485 TTTTGGGTATGATCCGATCGACAAACAATTCAAGGTATTGCGTATCACATTGTTGCCTAG 544
||||||||||||||| || || ||||||||||||||||| | ||| | || ||
Sbjct 516 TTTTGGGTATGATCCTATTGAGAAACAATTCAAGGTATT--G--TCA-A-TG-AATATA- 567
Query 545 GGACTCACAGTGGTGGTATAGTGAGTATCAAGTTCTGACATTAGG-GCTTGGA-AATCTT 602
|| | | | ||| |||| ||| || | |||||||||||||| | | || || ||
Sbjct 568 GG--TGA-TGGGGT-CTATAAAGAGCATTATGTTCTGACATTAGGAAC-T-GAGAACCTC 621
Query 603 TCATGGAGAAAGATCCAATGTTGC-ACACCTCA--TT-AT-ATTCTAGAAGATTATGGTA 657
|| ||||||| |||| |||||| | | ||| || || || ||||| ||| || |
Sbjct 622 TCTTGGAGAAGGATCGAATGTT-CTATACCCCATGTTCATGGTTCTA-AAG-----GG-A 673
Query 658 TATGCATCAATGGTGTTTTGTATTATCCCGCAA-GGCT 694
||||||||||||||||||||||||||| |||| ||||
Sbjct 674 TATGCATCAATGGTGTTTTGTATTATCGAGCAAAGGCT 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5