BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923914

Length=1188
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61060.1 | Symbols:  | F-box family protein | chr1:22488548-...   311    1e-83


> AT1G61060.1 | Symbols:  | F-box family protein | chr1:22488548-22489711 
REVERSE LENGTH=804
Length=804

 Score =  311 bits (168),  Expect = 1e-83
 Identities = 311/378 (82%), Gaps = 17/378 (4%)
 Strand=Plus/Plus

Query  41   CAATCTCTGTGGA--A-GAAACCGAATACTTTGATCG-GATCCCTGTTGATCTCGTCATC  96
            ||| ||||| |||  | ||||| || || |||||| |  |||| |||||||||| ||| |
Sbjct  20   CAACCTCTGGGGACGACGAAACAGATTATTTTGAT-GCTATCCATGTTGATCTCTTCA-C  77

Query  97   AG-TAATATCTTGTCGAGATTGCCTCTGAAATCTATAGCTCAGTGTCGTTGCGTATCTAA  155
             | ||| |||||||||| | ||||  |||| |||||||||||||||||||||||||| ||
Sbjct  78   TGCTAAGATCTTGTCGAAACTGCCAGTGAAGTCTATAGCTCAGTGTCGTTGCGTATCAAA  137

Query  156  GCTCTGGTCATCCCGAATCCGCCTTCCAAATTACAACCTGTTGTTCCCGATCAAGCCCCC  215
            ||| |||||||| | ||| || | |||| |||||||| ||||||||||||||| | | ||
Sbjct  138  GCTATGGTCATCACAAATTCGTCGTCCATATTACAACATGTTGTTCCCGATCATGTCTCC  197

Query  216  GGCTCCACCGCGGATCGTTTTCACCATAGAATATGAAAG-AGAGTTGTTCGTCTACTCTT  274
             || |||||||||||| |||||||||| ||| |||  || || ||||||| ||||| |||
Sbjct  198  AGCCCCACCGCGGATCCTTTTCACCATCGAAAATG-CAGAAGGGTTGTTCTTCTACACTT  256

Query  275  CACCTCAGCTTC-ACAATCCTGGTGAGAACACGTCTCTTGTAGCCACCCTTCATCATAGG  333
            ||||||||| || | || |||| |||||||||||||||||||||||||||||||||||||
Sbjct  257  CACCTCAGCCTCGA-AACCCTGATGAGAACACGTCTCTTGTAGCCACCCTTCATCATAGG  315

Query  334  ACACGTGGGCA-AGGTTTCAGTGTATATC--GTCCTCCGGTTGGCGGATTGGTCTGTCGT  390
            ||| ||||  | || ||| | | |||| |  ||||||| |||||||||||| | |||| |
Sbjct  316  ACAAGTGGAAACAG-TTT-ACT-TATAACAAGTCCTCCTGTTGGCGGATTGTTATGTCTT  372

Query  391  CAACATTATCGAAAGAAT  408
             ||||| |||||||||||
Sbjct  373  GAACATGATCGAAAGAAT  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 58333033290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5