BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923930
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53670.1 | Symbols: MSRB1, ATMSRB1 | methionine sulfoxide re... 992 0.0
> AT1G53670.1 | Symbols: MSRB1, ATMSRB1 | methionine sulfoxide
reductase B 1 | chr1:20036641-20038219 FORWARD LENGTH=800
Length=800
Score = 992 bits (537), Expect = 0.0
Identities = 613/650 (94%), Gaps = 3/650 (0%)
Strand=Plus/Plus
Query 1 TTATAAGGTGTGATTGTGTAATGGCTTCTTCTAGTAGTTTAAC-A--ATACAATCAAGTT 57
||||||| ||||||||||| ||||||||||||| ||| ||||| | ||||||||||| |
Sbjct 27 TTATAAGCTGTGATTGTGTGATGGCTTCTTCTACTAGATTAACTATTATACAATCAAGCT 86
Query 58 TCGTCTCTGCAAGAACAAGCCTCAATTCCTTCTCCAAGCCAAATCTTTCTGGCTTCGCTT 117
||||||| ||||||||||| ||||||| | |||||||| |||||| |||||| |||||||
Sbjct 87 TCGTCTCCGCAAGAACAAGACTCAATTACGTCTCCAAGACAAATCATTCTGGGTTCGCTT 146
Query 118 GTCGTTCTCTTTCAAAACCCAGAAACTTGAGTCTCTTTGTTTCTTCTATGGGTTCTTCTA 177
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 147 GTCGTTCTCTTTCAAAACCCAGAAACTTGAGTCTCTCTGTTTATTCTATGGGTTCTTCTA 206
Query 178 GTTCTTCTCAGAAACCAGACAACGTCCAAGAGGCTGAGAAGAGTGACTATGCTTCTCTAA 237
||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 207 GTTCTTCTCCGAAACCAGACAACGTCCAAGAGGCTGAGAAGAATGAGTTTGCTTCTCTAA 266
Query 238 GTGAAAATGAATGGAAGAAAAGGCTAACACCAGAACAGTATTACATCACTAGACAGAAGG 297
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 267 GTGAAAATGAATGGAAGAAACGGCTAACACCAGAACAGTACTACATCACTAGACAGAAGG 326
Query 298 GGACAGAGAGAGCTTTCACTGGGGAGTATTGGAACTCAAAGACCCCAGGAGTATACAATT 357
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 327 GCACAGAGAGAGCTTTCACTGGGGAGTATTGGAACTCAAAGACCCCTGGAGTATATAATT 386
Query 358 GCCTATGTTGCGACACGCCTCTATTTGATTCATCAACAAAGTTTGATAGTGGAACAGGGT 417
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GTGTATGTTGCGACACACCTCTATTTGATTCATCAACAAAGTTTGATAGTGGAACAGGGT 446
Query 418 GGCCATCTTATTACAAACCAATTGGAAACAATGTGAAGACAAAGCTAGACCTCTCTATCA 477
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GGCCATCTTACTACCAACCAATTGGAAACAATGTGAAGACAAAGCTAGACCTCTCTATCA 506
Query 478 TCTTCATGCCTAGACAAGAAGTTGTCTGTGCTGTTTGTAATGCCCATCTTGGCCATGTCT 537
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 507 TCTTCATGCCTAGACAAGAAGTTGTCTGTGCTGTTTGTAACGCCCATCTTGGTCATGTCT 566
Query 538 TTGATGACGGTCCACGCCCAACGGGAAAACGATATTGTCTCAACAGTGCTGCTCTGAAAC 597
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 567 TTGACGACGGTCCACGCCCAACCGGAAAACGATATTGCCTCAACAGTGCTGCTCTGAAAC 626
Query 598 TTAACGCATTGGAGAAAACAAGAGATTGAGAGTATCTGGTACAAGGATTT 647
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 627 TTAACGCATTGGAGAAAACAAGAGATTGAGAGTTTCTGGTACAAGGATTT 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31245639434
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5