BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923932
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53700.1 | Symbols: WAG1, PK3AT | WAG 1 | chr1:20048586-2005... 2320 0.0
AT3G14370.1 | Symbols: WAG2 | Protein kinase superfamily protei... 676 0.0
> AT1G53700.1 | Symbols: WAG1, PK3AT | WAG 1 | chr1:20048586-20050115
FORWARD LENGTH=1530
Length=1530
Score = 2320 bits (1256), Expect = 0.0
Identities = 1405/1478 (95%), Gaps = 6/1478 (0%)
Strand=Plus/Plus
Query 2 AAAATCTTCACCGGAAAAAATGGAAGACGACGGTTATTACCTCGACACCGATCTCGATCT 61
|||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AAAAGCTTCACCGG-AAAAATGGAAGACGACGGTTATTACCTCGACACTGATCTCGATCT 59
Query 62 CAGCTTCACCTCCACAACAACAGATCGTACATTCACTTCATCAAGCGCTAGAACGAGTCT 121
|||||||||||||||| | || || ||||||||||| ||||||||||||||| |||||||
Sbjct 60 CAGCTTCACCTCCACAGCCACCGACCGTACATTCACCTCATCAAGCGCTAGATCGAGTCT 119
Query 122 CGCACGCTCAAGCCTCACCTTAAGCTTCAACGACAGACTCTCCACCGCAACAACTCCTTC 181
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 120 CGCACGCTCAAGCCTAACCTTAAGCTTCAACGACAGACTCTCAACCGCAACAACACCTTC 179
Query 182 AACCACCACTTCCTCCGCCGCAACAACACTACACCACCGTCGTTACGATCCTCACTGGAC 241
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 AACCACCACTTCCTCCGCGGCAACAACACTCCACCACCGTCGTTACGATCCTCACTGGAC 239
Query 242 ATCAATAAGAGCCGCAACAACTCTCTCCTCCGACGGAAGACTTCATCTCCGCCACTTTAA 301
||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 240 GTCAATCAGAGCCGCAACAACTCTCTCCTCCGACGGAAGACTCCATCTCCGTCACTTTAA 299
Query 302 ACTCGTCC-ACCACCTCGGAACTGGAAATCTTGGCCGTGTTTTCCTCTGTCACCTCCGTG 360
|||||||| | |||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 300 ACTCGTCCGA-CACCTCGGTACAGGAAATCTCGGCCGTGTTTTCCTCTGTCACCTCCGTG 358
Query 361 ATTGCCCTAACCCCACCGGATTCGCACTTAAAGTAATCGATCGTGATGTTCTCACGGCGA 420
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 ATTGCCCTAACCCTACCGGATTCGCACTTAAAGTAATCGATCGTGATGTTCTTACGGCGA 418
Query 421 AGAA-ACTTTCACACGTGGAAACAGAAGCTGAGATCCTCTCCTTGCTAGACCACCCATTC 479
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 AGAAGA-TTTCACACGTGGAAACAGAAGCTGAGATCCTCTCCTTGCTAGACCACCCGTTC 477
Query 480 TTACCTACACTCTACGCACGTATCGATGCTTCTCACTATACTTGTCTTCTCATTGATTAT 539
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 478 TTACCTACACTCTACGCACGTATCGATGCTTCTCACTATACTTGCCTCCTCATTGATTAT 537
Query 540 TGCCCTAACGGTGATTTACATTCCTTGCTCCGTAAGCAACCAAACAACCGGTTACCGATT 599
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 538 TGCCCTAACGGTGATTTACATTCCTTGCTCCGTAAACAACCTAATAACCGGTTACCGATT 597
Query 600 TCTTCGGTTAGATTCTTCGCCGCTGAAGTACTCGTAGCCTTGGAGTATCTCCACGCTCTC 659
|| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 598 TCCCCGGTTAGATTCTTCGCCGCCGAAGTACTCGTCGCCTTGGAGTATCTCCACGCCCTT 657
Query 660 GGAATCGTTTATCGAGATCTCAAACCAGAGAATATCTTGATTCGTGAAGATGGACACATT 719
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 658 GGAATCGTTTATCGAGATCTCAAACCGGAGAATATCTTGATTCGTGAAGATGGACATATC 717
Query 720 ATGCTCTCAGATTTCGATCTCTGTTTCAAAGCCGATGTAGTTCCAACTTTCCGATCTCGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGCTCTCAGATTTCGATCTCTGTTTCAAAGCCGATGTAGTTCCAACTTTCCGATCTCGA 777
Query 780 AGACTCCGGCGAGCTTCGTCTTCTCCGAGGAGGACTCGTCGTGTTGGCGGTTGTTTCTCC 839
|| ||||| || |||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 778 CGATTCCGGAGAACTTCGTCTTCTCCGAGGAAGACTCGTCGTGGTGGCGGTTGTTTCTCC 837
Query 840 ACGGAGGTAGAGTACGAGAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACGGAGGTAGAGTACGAGAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACG 897
Query 900 GCGTTTTCGAAATCGTGTGTAGGAACTCACGAGTATTTAGCGCCGGAGCTAGTCGCCGGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCGTTTTCGAAATCGTGTGTAGGAACTCACGAGTATTTAGCGCCGGAGCTAGTCGCCGGA 957
Query 960 AACGGACACGGAAGCGGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAGATGTTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 AACGGACACGGAAGCGGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAAATGTTA 1017
Query 1020 CACGGAACGACGCCGTTTAAAGGTGGTACCAAAGAACAAACACTGCGCAATATAGTATCA 1079
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1018 TACGGAACGACGCCGTTTAAAGGTGGTACAAAAGAACAAACCCTGCGCAATATAGTATCA 1077
Query 1080 AACGATGACGTGGCGTTTACGTTAGAAGAGGAAGGTATGGTTGAAGCGAAGGATTTGATA 1139
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1078 AACGATGACGTGGCGTTTACGTTAGAGGAAGAAGGTATGGTTGAAGCCAAGGATTTGATA 1137
Query 1140 GAGAAGCTGTTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGAT 1199
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GAGAAACTGTTAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGAT 1197
Query 1200 ATCAAAAGGCATGAGTTTTTCCAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAACCG 1259
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1198 ATCAAGAGGCATGAGTTTTTCGAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAGCCG 1257
Query 1260 CCGGAGATTCGGGGGCTGGTGAAGAAGACGAAGGCACATGCTGGTCACGTGACTGCTGTT 1319
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1258 CCGGAGATTCGGGGTCTGGTGAAGAAGACGAAGGCACATGCTGGTCACGTGACTGCTGCT 1317
Query 1320 GTTACGCCACGGAGGAGGAAGTGGTTGTGGTGGGCTTTATCGCATTTACTGCCTAGTAAA 1379
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1318 GTTACGCCACGGAGGAATAAGTGGTTGTGGTGGGCGCTATCGCATTTACTGCGTAGTAAA 1377
Query 1380 AGCTTGAACAAGAGTAGCAGTAAAATTCAGAGCAACAATAATTACTATCATTATGTGGGT 1439
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1378 AGCTTGAGCAAGAGTAGCAGTAAAATTCAGAGCAATAATAATTACTATCATTATGTGGGT 1437
Query 1440 AAAA-GCTATAACGCTGGTGGCAAACGCGTTTAAGGCG 1476
|||| ||||||||||| || ||||| |||||||| |||
Sbjct 1438 AAAAAGCTATAACGCTAGTCGCAAAAGCGTTTAATGCG 1475
> AT3G14370.1 | Symbols: WAG2 | Protein kinase superfamily protein
| chr3:4797845-4799504 REVERSE LENGTH=1660
Length=1660
Score = 676 bits (366), Expect = 0.0
Identities = 1128/1482 (76%), Gaps = 107/1482 (7%)
Strand=Plus/Plus
Query 41 CCTCGACACCGATCTCGATCTCAGCTTCACCTCCACAACAACAGATCGTACATTCACTTC 100
||| ||||||||||| |||||||||||||| ||||| || || || ||||||||| | |
Sbjct 61 CCT-GACACCGATCTTGATCTCAGCTTCACATCCACCACTACCGACCGTACATTCGC--C 117
Query 101 ATCAAGCGCTAGAACGAGTCTCGCACGCTCAAGCCTCACCTTAAGCTTCAACGACAGACT 160
| | || |||| ||| ||| |||| || || ||||||||||||||||||||
Sbjct 118 -T----C-CT----CGAG---CGCTCGCACAAGTCTAACATTAAGCTTCAACGACAGACT 164
Query 161 CTCCACCGCAACAACT-CCTTCAACCACCACTTCCTCCGCCGCAACAACAC-TAC-ACCA 217
||| || | | || | || || ||| | ||| || || | | | | | | ||||
Sbjct 165 CTCTACTTC--C-TCTGCAGTC-ACAACCTCATCCACCTCCTCCTCCTC-CGT-CAACCA 218
Query 218 CCGTCGTTACGATCCTCACTGGACATCAAT-AAGAGCCGCAACAAC-TCTCTCCTCCGAC 275
||||||| | |||||||||||| || |||| || | | |||| ||| |||||||||||||
Sbjct 219 CCGTCGTCATGATCCTCACTGGTCAGCAATCAA-ATCAGCAA-AACTTCTCTCCTCCGAC 276
Query 276 GGAAGAC-TTCATCTCCGCCACTTTAAACTCGTCCACCACCTCGGAACTGGAAATCTTGG 334
|||| || | || ||||||||| | ||||| | | ||||||||| || ||||| || ||
Sbjct 277 GGAA-ACATCCACCTCCGCCACCTGAAACTTATACGCCACCTCGGCACCGGAAACCTAGG 335
Query 335 CCGTGTTTTCCTCTGTCACCTCCGTGATTGCCCTAACCCCACCGGATTCGCACTTAAA-G 393
||| || ||||||||| |||||||||| | || || || ||||||| ||||| |
Sbjct 336 CCGAGTGTTCCTCTGTAACCTCCGTGA---CTCT-TCCGCA--AGATTCGC-TTTAAAGG 388
Query 394 TAATCGATCGTGA-TGT-TCTC-ACGGCGAAGAAACTTTCACACGTGGAAACAGAAGCTG 450
| ||||| ||| | ||| || | |||| |||||| || || || || || || || || |
Sbjct 389 TCATCGACCGTAACTGTCTCACGACGGAGAAGAAGCTCTCTCAGGTCGAGACGGAGGCAG 448
Query 451 AGATCCTCTCCTTGCTAGACCACCC-ATTCTTACCTACACTCTACGCACGTATCGATGCT 509
|||||||||||||||| |||||||| ||||| ||||| ||||| || |||||||| |
Sbjct 449 AGATCCTCTCCTTGCTGGACCACCCTTTTCTT-CCTACGCTCTATGCTCGTATCGACGAG 507
Query 510 TCTCACTATACTTGTCTTCTCATTGATTATTGC-CCTAACGGTGATTTACATTCCTTGCT 568
|||||||| || ||||| ||||||||||| ||| || || || || |||||||||||| |
Sbjct 508 TCTCACTACACGTGTCTCCTCATTGATTA-TGCTCCCAATGGAGACTTACATTCCTTGTT 566
Query 569 CCGTAAGCAACCAAACAACCGGTTACCGATTTC-TTCGGTTAGATTCTTCGCCGCTGAAG 627
|| |||||||| ||||| ||||||| ||| ||||||||||||| ||||| ||||
Sbjct 567 ACGCAAGCAACCTGGTAACCGTTTACCGA-TTCAGCCGGTTAGATTCTTTGCCGCCGAAG 625
Query 628 TACTCGTAGCCTTGGAGTATCTCCACGCTCTCGGAATCGTTTATCGAGATCTCAAACCAG 687
| ||||| || || ||||| || ||||| | |||||||| || || ||||| ||||| |
Sbjct 626 TTCTCGTTGCATTAGAGTACCTTCACGCAATGGGAATCGTATACCGCGATCTTAAACCTG 685
Query 688 AGAATATCTTGATTCGTGAAGATGGACACATTATGCTCTCAGATTTCGATCTCTGTTTCA 747
| || | ||| |||||||||| |||||| | ||| | || ||||| ||||| |||||||
Sbjct 686 AAAACGTTTTGCTTCGTGAAGACGGACACGTCATGTTGTCGGATTTTGATCTTTGTTTCA 745
Query 748 AAGCCGATGTAGTTCCAACTTTCCGATCTCGAAGACT-CCGGCGAGCTTCGTCTTCTCCG 806
|| |||| || || || ||||| |||||| | || |||| || |||| || |||||
Sbjct 746 AATCCGACGTTGTCCCTACTTTTAAATCTCGTCG-CTACCGGAGATCTTCTTCATCTCC- 803
Query 807 AGGAGGAC-TCGTCGT-GTTG--GCGGTTG-TT-T-C--T-CCACGGAGGTAGAGTACGA 856
| | | ||||||| | | ||||||| || | | | | ||||| | |||||||
Sbjct 804 --GTCG-CTTCGTCGTAGAAGAAGCGGTTGCTTCTCCGTTGCTGCGGAGAAAAAGTACGA 860
Query 857 GAGAGAAGAGATAGTAGCGGAATTCGCGGCGGAGCCAGTGACGGCGTTTTCGAA-ATCGT 915
|||||| ||||| || | || || ||||| ||||| || ||||||||||| || ||| |
Sbjct 861 GAGAGAGGAGATTGTTTCAGAGTTTGCGGCAGAGCCTGTAACGGCGTTTTC-AAGATCTT 919
Query 916 GTGTAGGAACTCACGAGTAT-TTAGCGCCGGAGCTAGTCGCCGGAAACGGACACGGAAGC 974
|||| ||||| || |||||| || |||||||||||||| |||| |||||||||||||||
Sbjct 920 GTGTCGGAACACATGAGTATCTT-GCGCCGGAGCTAGTTTCCGGCAACGGACACGGAAGC 978
Query 975 GGTGTAGATTGGTGGGCGTTTGGGATATTTCTATACGAGATGTTACACGGAACGACGCCG 1034
|| ||||| ||||||||||| || ||||| || |||||| | || |||| |||||||||
Sbjct 979 GGAGTAGACTGGTGGGCGTTCGGAATATTCCTTTACGAGTTATTGTACGGTACGACGCCG 1038
Query 1035 TTTAAAGGTG-GTACCAAAGAACAAACACTGCGCAATATAGTATC-A-AACGATGA-CGT 1090
||||| || | | | ||||| ||||||||||| ||||||||||| | || | || ||
Sbjct 1039 TTTAAGGGAGAG-AGTAAAGAGCAAACACTGCGGAATATAGTATCGACCACTAAGACCG- 1096
Query 1091 GGCGTTTACGTTAGAAGA-GGAAGGTATGGTTGAAGCGAAGGATTTGATAGAGAAGCTGT 1149
| |||| | || || || | | | | |||||| | ||| ||||| |||||||| |
Sbjct 1097 CGAGTTT-CCATA-TGGACGG-TGATTTAGATGAAGCTAGGGACTTGATTGAGAAGCTTT 1153
Query 1150 TAGTGAAAGATCCGAGGAAGAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAAAGGC 1209
| || || || || ||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1154 TGGTTAAGGACCCAAGGAAAAGGCTAGGATGCGCCAGGGGTGCGCAAGATATCAAACGTC 1213
Query 1210 ATGAGTTTTTCCAAGGAATCAAGTGGCCGTTGATCAGAAACTATAAACCGCCGGA-GA-- 1266
|| |||||| | |||||||||||||||||||| || | ||||| || ||||| ||
Sbjct 1214 ATCCGTTTTTTGATGGAATCAAGTGGCCGTTGATTAGGCATTATAAGCCACCGGAAGAAG 1273
Query 1267 TTCGGGGGCTGGTGA--A-GAAGACGAA-G-G-C-ACATGCTGGTCACGTGACTGCTGTT 1319
|| | || || |||| | |||| | || | | | ||||||| ||||||||| ||| |||
Sbjct 1274 TTAGAGGTCTTGTGATTAAGAAGTC-AACGAGACCACATGCTAGTCACGTGATTGCCGTT 1332
Query 1320 GTTAC-GCCACGGAGGAGGAA--GTGGTTGTGGTGGGCTTTATCGCATTTACTGC-CTAG 1375
| || || |||||| | || || |||||| |||| || || ||||||||| | |
Sbjct 1333 -TCACCGCGACGGAGAA--AATCGTTTTTGTGGAGGGCGTTGTCATATTTACTGCGCG-G 1388
Query 1376 TAAAAGCTTGAACAAGAG-TAGCAGTAAAATTCAGAGCAACAATAATTACTATCATTATG 1434
|||||||| | || | | | ||||||| ||||||||| | |||||| ||||| ||||
Sbjct 1389 TAAAAGCT----CTAGTGGTGGGAGTAAAAATCAGAGCAATAGTAATTATTATCACTATG 1444
Query 1435 TGGGTAAAAGCTATAACGCTG-GTGGCAAACGCGTTTAAGGC 1475
|||| |||||||| ||| | || |||||||||||||||||
Sbjct 1445 TGGGCAAAAGCTA---CGC-GAGTCGCAAACGCGTTTAAGGC 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5