BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923933

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 | chr1:20052...   285    1e-76


> AT1G53708.1 | Symbols: RTFL9 | ROTUNDIFOLIA like 9 | chr1:20052393-20053195 
FORWARD LENGTH=630
Length=630

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 165/170 (97%), Gaps = 1/170 (1%)
 Strand=Plus/Plus

Query  1    ACC-AAAAAACCTTGGTTGTGGTAATGGCTGAGTTCAAGAGTAAGCTAAACAAAGGTCAC  59
            ||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct  114  ACCAAAAAAACCTTGATTGTTGTAATGGCTGAGTTCAAGAGTAAGTTAAACAAAGGTCAC  173

Query  60   GCCTTTACAAGCAAATGTGCTTCCTTGGTGAAGGAGCAACGAGCTCGTCTCTACATTCTT  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  174  GCCTTTACAAGCAAATGTGCTTCCTTGGTGAAGGAGCAACGAGCTCGTCTCTACATTCTT  233

Query  120  CGTCGTTGCGCTACCATGCTTTGTTGCTGGTACATCCAAGGCGATGACTC  169
            |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  234  CGTCGTTGTGCTACCATGCTTTGTTGCTGGTACATCCAAGGCGATGACTC  283



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10455691792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5