BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923942

Length=1214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30920.1 | Symbols:  | F-box family protein | chr1:11004242-...  54.7    2e-06


> AT1G30920.1 | Symbols:  | F-box family protein | chr1:11004242-11005444 
REVERSE LENGTH=1203
Length=1203

 Score = 54.7 bits (29),  Expect = 2e-06
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  651  GTTTGCTTTGATGTTAGGTCTGAGAATTT  679
            |||||||||||||||||||||||||||||
Sbjct  706  GTTTGCTTTGATGTTAGGTCTGAGAATTT  734



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59638247460


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5