BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923943
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53820.1 | Symbols: | RING/U-box superfamily protein | chr1... 1310 0.0
> AT1G53820.1 | Symbols: | RING/U-box superfamily protein | chr1:20091491-20092423
FORWARD LENGTH=933
Length=933
Score = 1310 bits (709), Expect = 0.0
Identities = 839/900 (93%), Gaps = 16/900 (2%)
Strand=Plus/Plus
Query 33 TCTATTTTCAGCAAATTCGAAGGAGAAGAGACGATGGGAAAAGTTCTTCTATTCGCAATC 92
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 28 TCTCTTTTCAGCAAATTCGAAGGAGAAGAGACGATGGGAAAAGTTCTTCTATTCTCAATC 87
Query 93 GTATCAATTTTCACAGGGATTCTGTTCCTCCTCTTGCTTCATCTCTACGCTAGACTCTTT 152
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 88 GTATCGATTTTCACAGGGATTCTATTCCTCCTCTTGCTTCATCTCTACGCAAGACTCTTT 147
Query 153 TGGTGGCGTGTGGAACAACATTTCAACCTAAACCTTATCCAATCCGACGAGCCTGGTTCC 212
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 148 TGGTGGCGTGTGGAACAACATTTCAACCTAAACCTAATCCAATCCGACGATCCTGGCTCC 207
Query 213 ACAGTCATCGGACGTAATCATCGACAACGTCGTTTCGTCTTTGCTCAAGGTCAAGAAGAT 272
||||||||||||||||||| ||||| ||||||||| ||||| |||||| |||||||||||
Sbjct 208 ACAGTCATCGGACGTAATCCTCGACGACGTCGTTTTGTCTTCGCTCAAAGTCAAGAAGAT 267
Query 273 CCTCCTCACAACGCCGGTCTTGATTCTAAAATTCTCCAATCGATCCATGTTATTGTTTTC 332
|||| ||||||||| || ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 268 CCTCTTCACAACGCTGGACTTGATTCTAAAATTCTCCAATCTATCCATGTTGTTGTTTTC 327
Query 333 AAGTCTACGGACTTCAAAGACGGGTTAGAATGTGCCGTTTGTCTCTCCGAACTCGTTGAT 392
|||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 328 AAGTGTACGGACTTCAAAGACGGGTTAGAATGCGCCGTTTGTCTCTCTGATCTCGTTGAT 387
Query 393 GGCGACAAAGCTAGGGTTTTGCCAAGGTGTAATCATGGGTTCCATGTTGATTGCATCGAC 452
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 388 GGCGACAAAGCTAGGGTTTTGCCAAGGTGTAATCATGGGTTTCATGTGGATTGTATCGAT 447
Query 453 ATGTGGTTTCAATCTCATTCCACTTGTCCTCTCTGTAGAAACACCGTTGGTTCCGTGGAA 512
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ATGTGGTTTCAGTCTCATTCCACTTGTCCTCTCTGTAGAAACACCGTTGGTTCCGTGGAA 507
Query 513 GAGACGATACATGGAGGAAGTGAGGGTTTACCTCAAAATCAAAACTTTGAATCAGGGCAC 572
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GATACGACACATGGAGGAAGTGAGGGTTTACCTCAAAATCAAAACTTTGAATCAGGGCAC 567
Query 573 TCGAGTAATCAGCATAATACATCTCAAGATCAGAGCCCTGTTCTTCG-GTTTTCGACAGA 631
|||| ||||||||||||| ||||||||||||||||| ||||| | | ||||||||||||
Sbjct 568 TCGACTAATCAGCATAATCCATCTCAAGATCAGAGCTTTGTTCAT-GAGTTTTCGACAGA 626
Query 632 ACCTCTGAGTTTTCCGACAAATGTTCTGGTTTGGGGAGATCAGAATCAAGTTAGAAGTGC 691
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 627 ACCTCTGAGTTTTCCGACAAATGTACTGGTTTGGGGAGATCAGAATCAAGTTAGAAGTGC 686
Query 692 AGGCCTCGTTGTTACTGAAGAATCCCCTTCTGGAAATTTTGCAGATTCGTCTAACGATCA 751
|||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 687 AGGCCTCGTTGTTACTGAAGAATCTCCTTCTGGAAATTTTGCAGCTTCGTATAACGATCA 746
Query 752 TCAACAAGAATCTAGTAGTACCAATACCCATATCAGAGCACAAGAAGTGAGGGCGGTTGT 811
||||||||||||||||||||||| | | || || | ||||||| |||||||||
Sbjct 747 TCAACAAGAATCTAGTAGTACCAG-A----T--CA---CA-A-GAAGTGACGGCGGTTGT 794
Query 812 GGTGGACATTCCGGCGAATTCAAGTGAGAATTTACCCGAGAGAATCGACGAAGAAGAACC 871
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 795 GGTGGACATTCCGGATAATTCAAGTGAGAATTTATCCGAGAGAATCGACGAAGAAGAACC 854
Query 872 TAAGTCACCGATGTTCACGAGGTTAAGATCGCTTAAGAA-GTTTTTGAGTAGAGAGAAGA 930
|||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||
Sbjct 855 TAAGTCACCGATGTTCACAAGGTTAAGATTGCTTAAGAATGTTTT-GAGTAGAGAGAAGA 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49179229913
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5