BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923946
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53830.1 | Symbols: ATPME2, PME2 | pectin methylesterase 2 |... 2758 0.0
AT3G14310.1 | Symbols: ATPME3, PME3 | pectin methylesterase 3 |... 898 0.0
> AT1G53830.1 | Symbols: ATPME2, PME2 | pectin methylesterase 2
| chr1:20098522-20100889 FORWARD LENGTH=1948
Length=1948
Score = 2758 bits (1493), Expect = 0.0
Identities = 1702/1805 (94%), Gaps = 6/1805 (0%)
Strand=Plus/Plus
Query 1 CAACAACATTGTTAAAAATAATGGCACCAATCAAAGATTTCATATCCAAATTCTCTGATT 60
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 21 CAACAACATTGTTAAGAATAATGGCACCAATCAAAGAATTCATATCCAAATTCTCAGATT 80
Query 61 TCAAGAACAACAAGAAACTCATTCTCTCCTCCGCCGCGATAGCCTTATTGTTATTCGCCA 120
|||| |||||||||||||||||||||||||||||||| |||||||| | ||||| |||
Sbjct 81 TCAAAAACAACAAGAAACTCATTCTCTCCTCCGCCGCAATAGCCTTGCTATTATTGGCCT 140
Query 121 CCGTAGTCGGAATCGCCG-C-C-ACAACAAACCaaaacaaaaataaaaaaaTCACAACTC 177
|| ||||||||||||||| | | |||||||||||||||||||| |||||||||||||||
Sbjct 141 CCATAGTCGGAATCGCCGCCACAACAACAAACCAAAACAAAAACCAAAAAATCACAACTC 200
Query 178 TATCTTCAACGTCACACGCCGTTCTTAAATCTGTTTGCAGCTCAACACTTTACCCGGAGC 237
||||||| || ||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 201 TATCTTCGACATCACACGCCATTCTAAAATCTGTTTGCAGCTCAACACTATACCCGGAGC 260
Query 238 TCTGTTTCTCCACCGTGGCAGCCACCGGAGGAAAAGAGCTGACGTCACAGAAAGAAGTCA 297
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TCTGTTTTTCCGCCGTGGCAGCCACCGGAGGAAAAGAGCTGACGTCACAGAAAGAAGTCA 320
Query 298 TCGAAGCGTCACTTAACCTAACAACCAAAGCCGTGAAACACAACTACTTCGCCGTCAAGA 357
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 321 TCGAAGCGTCACTTAACCTAACTACCAAAGCCGTGAAACACAACTACTTCGCTGTCAAGA 380
Query 358 AGCTGATCGCGAAGCGAAAAGGTTTGACACCGCGTGAGGTCACGGCGCTTCACGACTGTT 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGCTGATCGCGAAGAGAAAAGGTTTGACACCGCGTGAGGTCACGGCGCTTCACGACTGTT 440
Query 418 TGGAGACAATCGACGAGACGTTAGATGAGCTTCACGTGGCGGTGGAGGATATTCATCAGT 477
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 441 TGGAGACAATCGACGAGACGTTAGATGAGCTCCACGTGGCGGTGGAGGATCTTCATCAGT 500
Query 478 ATCCTAAACAAAAATCTCTGAGGAAACATGCCGATGATCTCAAAACACTAATTAGCTCAG 537
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 501 ATCCTAAGCAAAAATCTCTGAGGAAACATGCCGATGATCTCAAAACACTAATCAGCTCAG 560
Query 538 CCATTACTAACCAAGGGACTTGCCTTGACGGTTTCTCTTACGACGACGCTGATAGGAAAG 597
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 561 CCATTACTAATCAAGGGACTTGCCTTGACGGTTTCTCTTACGACGACGCCGATAGGAAAG 620
Query 598 TTCGTAAGGTGTTATTGAAGGGCCAGGTACACGTGGAGCACATGTGTAGCAACGCATTGG 657
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 621 TTCGTAAGGCGTTATTGAAGGGTCAGGTACACGTGGAGCACATGTGTAGCAACGCATTAG 680
Query 658 CAATGATCAAGAACATGACAGAAACCGACATAGCCAACTTCGAGCTAAGAGATAAGTCTT 717
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 681 CAATGATCAAGAACATGACAGAAACCGACATAGCCAACTTTGAGCTAAGAGATAAGTCTT 740
Query 718 CATCCTTCACCAACAACAACAACCGCAAGCTCAAGGAGGTTACCGGTGACTTAGACAGCG 777
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 741 CAACCTTCACCAACAACAACAACCGCAAGCTCAAGGAGGTTACCGGCGACTTAGACAGTG 800
Query 778 AAGGATGGCCAATGTGGTTATCAGTCGGAGATAGAAGGCTTCTTCAAGGGTCAACGATCA 837
| |||||||||| ||||||||| || ||||| ||||||||||||||||||||||| || |
Sbjct 801 ATGGATGGCCAAAGTGGTTATCCGTTGGAGACAGAAGGCTTCTTCAAGGGTCAACAATTA 860
Query 838 AAGCAGACGCTACGGTAGCGGCTGACGGAAGCGGTGACTTTACGACGGTAGCGGCGGCTG 897
|||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 861 AAGCAGACGCTACGGTGGCGGATGACGGAAGCGGTGACTTTACAACGGTAGCCGCGGCTG 920
Query 898 TAGCTGCGGCGCCAGAGAAGAGTAACAAGAGGTTTGTGATACATATAAAGGCAGGAGTTT 957
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TGGCTGCGGCGCCAGAGAAGAGTAACAAGAGGTTTGTGATACATATAAAGGCAGGAGTTT 980
Query 958 ATAGAGAGAATGTGGAAGTGACGAAGAAGAAGAAGAATATAATGTTTTTGGGAGATGGTC 1017
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 981 ATAGAGAGAATGTGGAAGTGACGAAGAAGAAGACGAATATAATGTTCTTGGGAGATGGCC 1040
Query 1018 AAGGAAAAACTATTATCACCGGAAGTAGAAATGTTGTCGACGGAAGCACCACTTTCCAAT 1077
|| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1041 GTGGCAAAACTATTATCACTGGAAGTAGAAATGTCGTCGATGGAAGCACCACTTTCCACT 1100
Query 1078 CCGCTACTGTTGCTGCCGTCGGCGAGAA-TTTCCTAGCGCGTGACATCACATTCCAAAAC 1136
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1101 CCGCTACTGTTGCTGCCGTCGGCGAGAGGTTTC-TAGCGCGTGACATCACATTCCAAAAC 1159
Query 1137 ACGGCGGGTCCCTCAAAGCATCAAGCGGTGGCTCTCCGAGTTGGGTCGGATTTTTCCGCT 1196
|| || ||||| || |||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1160 ACCGCCGGTCCGTCGAAGCATCAAGCGGTGGCTCTCCGAGTCGGATCAGATTTTTCCGCT 1219
Query 1197 TTTTACCAGTGCGACATGTTTGCTTACCAAGATACACTTTACGTCCATTCAAATCGTCAA 1256
|||||||| ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||
Sbjct 1220 TTTTACCAATGCGACATGTTTGCTTATCAAGACACACTTTATGTCCACTCAAATCGTCAA 1279
Query 1257 TTCTTTGTGAAATGTCACATTACCGGAACCGTCGATTTCATTTTCGGAAACGCAGCCGCG 1316
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1280 TTCTTTGTGAAATGTCACATAACCGGAACCGTCGATTTCATCTTCGGAAACGCAGCCGCG 1339
Query 1317 GTTTTACAAGATTGCGATATTAACGCACGCCGACCAAATCCCGGTCAGAAAAACATGGTT 1376
||||||||||| |||||||| || |||||| |||||||| ||||||||||||||||||||
Sbjct 1340 GTTTTACAAGACTGCGATATAAATGCACGCAGACCAAATTCCGGTCAGAAAAACATGGTT 1399
Query 1377 ACAGCTCAAGGACGGTCTGATCCGAATCAAAACACGGGGATAGTGATTCAGAATTGTCGG 1436
|| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1400 ACCGCCCAAGGACGGTCTGATCCGAATCAAAACACGGGGATTGTGATCCAGAATTGTCGT 1459
Query 1437 ATTGGTGGCACGTCGGATCTTTTGGCCGTGAAAGGAACGTTTCCGACGTATCTTGGTCGT 1496
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1460 ATTGGTGGCACGTCGGATCTTTTGGCCGTGAAAGGAACGTTCCCGACGTATCTTGGTCGT 1519
Query 1497 CCATGGAAGGAGTACTCACGTACGGTGATAATGCAGTCGGATATATCCGACGTGATCCGA 1556
|| |||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1520 CCTTGGAAGGAATATTCACGGACGGTGATAATGCAATCGGATATATCCGACGTGATCCGA 1579
Query 1557 CCCGAAGGATGGCTTGAGTGGAGCGGGAGTTTTGCGTTGGACACTCTGACTTATAGAGAG 1616
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1580 CCCGAAGGATGGCATGAGTGGAGCGGGAGTTTTGCGTTGGACACTCTAACTTATAGAGAG 1639
Query 1617 TATTTGAATAGAGGAGGAGGGGCAGGAACTGCAAATAGAGTGACGTGGAAGGGCTTTAAG 1676
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1640 TATTTGAATAGAGGAGGAGGGGCAGGAACTGCAAATAGAGTGAAGTGGAAGGGCTATAAG 1699
Query 1677 GTAATTACAAGTGATACAGAAGCTCAGCAATTTACGGCTGGTCAGTTTATTGGTGGTGGA 1736
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1700 GTAATTACAAGTGATACAGAAGCTCAGCCATTTACGGCTGGTCAGTTTATTGGTGGTGGA 1759
Query 1737 GGCTGGTTGGCGTCGACCGGTTTTCCTTTCTCGTTAAGTCTTTGAAATTaaaaaaaTTGA 1796
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1760 GGCTGGTTAGCGTCGACCGGTTTTCCTTTCTCGTTAAGTCTTTGAAATTAAAAGA-TTGA 1818
Query 1797 GTTAT 1801
||||
Sbjct 1819 CTTAT 1823
> AT3G14310.1 | Symbols: ATPME3, PME3 | pectin methylesterase 3
| chr3:4771902-4775119 REVERSE LENGTH=2115
Length=2115
Score = 898 bits (486), Expect = 0.0
Identities = 846/1018 (83%), Gaps = 32/1018 (3%)
Strand=Plus/Plus
Query 780 GGATGGCCAA-TGTGGTTATCAGTC-GGAGATAGAAGGCTTCTTCAAGGG-TCAACG-AT 835
|||||||||| | |||||||| | | |||||||| |||||||||| |||| || | | |
Sbjct 802 GGATGGCCAACT-TGGTTATCCG-CTGGAGATAGGAGGCTTCTTC-AGGGTTC-AGGTGT 857
Query 836 CAAAGCAGACGCTACGGTAGCGGCTGACGGAAGCGGTGAC-TTTACGACGGTAGCGGCGG 894
||||| ||||| || || || |||||||| |||||| || |||| || || || || |
Sbjct 858 GAAAGCTGACGCCACCGTGGCAGCTGACGGTAGCGGT-ACATTTAAAACTGTGGCTGCTG 916
Query 895 CTGTAGCTGCGGCGCCAGAGAAGAGTAACAAGAGGTTTGTGATACATATAAAGGCAGGAG 954
| || || ||||| || || || ||||| ||||||| ||||||||||||||| || ||||
Sbjct 917 CGGTTGCCGCGGCCCCTGAAAATAGTAATAAGAGGTATGTGATACATATAAAAGCCGGAG 976
Query 955 TTTATAGAGAGAATGTGGAAG-TGACGAAGAAGAAGAAGAATATAATGTTTTTGGGAGAT 1013
|||| |||||||||||||| | || | |||||||| ||||||||||||||| ||||||||
Sbjct 977 TTTACAGAGAGAATGTGGAGGTTG-CTAAGAAGAAAAAGAATATAATGTTTATGGGAGAT 1035
Query 1014 GGTCAAGGA--AAAACTATTATCACCGGAAGTAGAAATGTTGTCGACGGAAGCACCACTT 1071
|||| ||| | ||||||||||||||||||| |||| ||||| ||||| ||||||||||
Sbjct 1036 GGTC--GGACGAGAACTATTATCACCGGAAGTCGAAACGTTGTAGACGGTAGCACCACTT 1093
Query 1072 TCCAATCCGCTACTGTTGCTGCCGTCGGCGAGA-ATTTCCTAGCGCGTGACATCACATTC 1130
|||| ||||| || |||||||| |||||||||| | ||| |||| ||||||||||| |||
Sbjct 1094 TCCACTCCGCCACCGTTGCTGCTGTCGGCGAGAGA-TTCTTAGCTCGTGACATCACTTTC 1152
Query 1131 CAAAACACGGCGGGTCCCTCAAAGCATCAAGCGGTGGCTCTCCGAGTTGGG-TCGGATTT 1189
||||||||||||||||| || ||||| ||||||||||||||||| | |||| || |||||
Sbjct 1153 CAAAACACGGCGGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTG-TGGGTTCTGATTT 1211
Query 1190 TTCCGCTTTTTACCAGTGCGACATGTTTGCTTACCAAGATACACTTTACGTCCATTCAAA 1249
||||| || ||| | ||||||||||| ||||| ||||| || || |||||||| || ||
Sbjct 1212 CTCCGCCTTCTACAATTGCGACATGTTAGCTTATCAAGACACTCTATACGTCCACTCTAA 1271
Query 1250 TCGTCAATTCTTTGTGAAATGTCACATTACCGGAACCGTCGATTTCATTTTCGGAAACGC 1309
||||||||||| || ||||||| ||| |||||||||| || ||||| |||||||||||
Sbjct 1272 CCGTCAATTCTTCGTCAAATGTCTCATCGCCGGAACCGTTGACTTCATCTTCGGAAACGC 1331
Query 1310 AGCCG-CGGTTTTACAAGATTGCGATATTAACGCACGCCGACCAAATCCCGGTCAGAAAA 1368
|||| | || | ||||| || || || |||| ||||| || ||| ||||||||||||
Sbjct 1332 CGCCGTC-GTGCTCCAAGACTGTGACATCCACGCTCGCCGCCCTAATTCCGGTCAGAAAA 1390
Query 1369 ACATGGTTACAGCTCAAGGACGGTCTGATCCGAATCAAAACACGGGGATAGTGATTCAGA 1428
||||||| |||||||| ||| | | ||||| || || ||||| ||||| || || ||||
Sbjct 1391 ACATGGTCACAGCTCAGGGAAGAACGGATCCTAACCAGAACACAGGGATCGTTATCCAGA 1450
Query 1429 ATTGTCGGATTGGTGGCACGTCGGATCTT-TTGGCCGTGAAAGGAACG-TTTCCGACGTA 1486
| ||| |||| |||| |||||||||| || | | |||||||| | | |||||||||||
Sbjct 1451 AATGTAGGATCGGTGCCACGTCGGAT-TTACAGTCGGTGAAAGGTA-GTTTTCCGACGTA 1508
Query 1487 TCTT-GGTCGTCCATGGAAGGAGTACTCACGTACGGTGATAATGCAGTCGGATATATCCG 1545
||| ||||| ||||||||||| || |||| ||||||||||||||||||| ||| ||||
Sbjct 1509 -CTTGGGTCGGCCATGGAAGGAATATTCACAAACGGTGATAATGCAGTCGGCTATCTCCG 1567
Query 1546 ACGTGATCCGACCCGAAGGATGGCT-TGAGTGGAGCGGGAGTTTTGCGTTGGACACTCTG 1604
||||||||||||||||||| ||| | ||||||| ||||| |||||||||| ||||||||
Sbjct 1568 ACGTGATCCGACCCGAAGGGTGG-TCCGAGTGGACCGGGACTTTTGCGTTGAACACTCTG 1626
Query 1605 ACTTATAGAGAGTATTTGAATAGAGGAGGAGGGGCAGGAACTGCAAATAGAGTGACGTGG 1664
||||| |||||||||| ||| | ||||| |||||| ||||||||||||||||||| ||||
Sbjct 1627 ACTTACAGAGAGTATTCGAACACAGGAGCAGGGGCTGGAACTGCAAATAGAGTGAAGTGG 1686
Query 1665 AAGGGCTTTAAGGTAATTACAAG-TGATACAGAAGCTCAGCAATTTACGGCTGGTCAGTT 1723
| |||||||||||||||||| | || | | |||||||| ||| |||||||||||||||
Sbjct 1687 AGGGGCTTTAAGGTAATTAC-GGCTGCTGCTGAAGCTCAAAAATATACGGCTGGTCAGTT 1745
Query 1724 TATTGGTGGTGGAGGCTGGTTGGCGTCGACCGGTTTTCCTTTCTCGTTAAGTCTTTGA 1781
||||||||||||||||||||| ||||||||||||| || |||||| | ||||||||
Sbjct 1746 TATTGGTGGTGGAGGCTGGTTATCGTCGACCGGTTTCCCCTTCTCGCTCGGTCTTTGA 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89105967375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5