BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923952
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67380.1 | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | c... 152 2e-36
> AT5G67380.1 | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 |
chr5:26880966-26883430 REVERSE LENGTH=1467
Length=1467
Score = 152 bits (82), Expect = 2e-36
Identities = 111/123 (90%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 188 GCTGCGTAAGCTTCGTCTTATAGATTGGGGTCTTGCTGAGTTTTACCACCCTGGAAAAGA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GCTGCGTAAGCTTCGTCTTATAGATTGGGGTCTTGCTGAGTTTTACCACCCTGGAAAAGA 820
Query 248 GTATAATGTCCGTGTTGC-T-----T----CAAGGGACCTGAACTTCTCGCGGACTTGCA 297
|||||||||||||||||| | | |||||||||||||||||| | |||||||||
Sbjct 821 GTATAATGTCCGTGTTGCCTCAAGATATTTCAAGGGACCTGAACTTCTTGTGGACTTGCA 880
Query 298 AGA 300
|||
Sbjct 881 AGA 883
Score = 104 bits (56), Expect = 5e-22
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 130 GTCAACGTGATTCGACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGG 188
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GTCAATGTGATTCGACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGG 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15281395696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5