BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923953
Length=424
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53903.1 | Symbols: | Protein of unknown function (DUF581) ... 645 0.0
AT1G53885.1 | Symbols: | Protein of unknown function (DUF581) ... 645 0.0
> AT1G53903.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:20132288-20133017 FORWARD LENGTH=631
Length=631
Score = 645 bits (349), Expect = 0.0
Identities = 399/422 (95%), Gaps = 8/422 (2%)
Strand=Plus/Plus
Query 3 CAATTCAC-AGAGATAGAGAGAATGACTAAAATCTCTGTTGGATTGCAACTTGTGAC-AG 60
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 55 CAATTC-CTAAAGATAGAGAGAATGACTAAAATCTCTGTTGGATTGCAACTTGTGACAAG 113
Query 61 CAGATTCAAAGGAAAAACCAAACAACATAGTGATCAAATCTTCACTGAGAATAAACCGAT 120
|||||| | |||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 114 -AGATTCGAGGGAAAAACTAAACAATATAGTGATCAAATCTTCACTGAGACTAAACCGAT 172
Query 121 CCAATCCAAACATCTCGGAGCTTTGTTTCCTCAAAACATGTCATCTCTGCAATAAACAAC 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 173 CCAATCCAAACATCTCGGAGCTTTGTTTCCTTAAAACATGTCATCTCTGCAATAAACAAC 232
Query 181 TCCATCAAGACAAAGATGTTTACATGTACAGAGGAGATTTGGGATTTTGTAGTAGAGAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCCATCAAGACAAAGATGTTTACATGTACAGAGGAGATTTGGGATTTTGTAGTAGAGAGT 292
Query 241 GCAGAGAAAGTCAGATTTTGAGTGATGATAGAAAAGAATTAGAGGCTTCGACGAAGATGA 300
|||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 293 GCAGAGAAAGTCAGATGTTGATTGATGATAGAAAAGAACTAGAGGCTTCGACGAAGATGA 352
Query 301 TGTTGGCTTCGTATAGACGATGTAACTC-CGGCGCCGGGAAAAGCGAGTCTCGAGA-TTT 358
||||||||||||| ||||||||||| | ||||||||| |||||||||||||| || |||
Sbjct 353 TGTTGGCTTCGTACAGACGATGTAA-TAACGGCGCCGGAAAAAGCGAGTCTCG-GAATTT 410
Query 359 GTTTGATGATCTCCGGCGACGACGCCAATTATTTATAGTTCCTTGAGGCTTTTTTAAGCA 418
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 411 GTTTGATGATCTCCGGCGACGACGTCAATTATTTATAGTTCCTTGAGGCTTCTTTAAGCA 470
Query 419 AT 420
||
Sbjct 471 AT 472
> AT1G53885.1 | Symbols: | Protein of unknown function (DUF581)
| chr1:20119723-20120458 FORWARD LENGTH=637
Length=637
Score = 645 bits (349), Expect = 0.0
Identities = 399/422 (95%), Gaps = 8/422 (2%)
Strand=Plus/Plus
Query 3 CAATTCAC-AGAGATAGAGAGAATGACTAAAATCTCTGTTGGATTGCAACTTGTGAC-AG 60
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 55 CAATTC-CTAAAGATAGAGAGAATGACTAAAATCTCTGTTGGATTGCAACTTGTGACAAG 113
Query 61 CAGATTCAAAGGAAAAACCAAACAACATAGTGATCAAATCTTCACTGAGAATAAACCGAT 120
|||||| | |||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 114 -AGATTCGAGGGAAAAACTAAACAATATAGTGATCAAATCTTCACTGAGACTAAACCGAT 172
Query 121 CCAATCCAAACATCTCGGAGCTTTGTTTCCTCAAAACATGTCATCTCTGCAATAAACAAC 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 173 CCAATCCAAACATCTCGGAGCTTTGTTTCCTTAAAACATGTCATCTCTGCAATAAACAAC 232
Query 181 TCCATCAAGACAAAGATGTTTACATGTACAGAGGAGATTTGGGATTTTGTAGTAGAGAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCCATCAAGACAAAGATGTTTACATGTACAGAGGAGATTTGGGATTTTGTAGTAGAGAGT 292
Query 241 GCAGAGAAAGTCAGATTTTGAGTGATGATAGAAAAGAATTAGAGGCTTCGACGAAGATGA 300
|||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 293 GCAGAGAAAGTCAGATGTTGATTGATGATAGAAAAGAACTAGAGGCTTCGACGAAGATGA 352
Query 301 TGTTGGCTTCGTATAGACGATGTAACTC-CGGCGCCGGGAAAAGCGAGTCTCGAGA-TTT 358
||||||||||||| ||||||||||| | ||||||||| |||||||||||||| || |||
Sbjct 353 TGTTGGCTTCGTACAGACGATGTAA-TAACGGCGCCGGAAAAAGCGAGTCTCG-GAATTT 410
Query 359 GTTTGATGATCTCCGGCGACGACGCCAATTATTTATAGTTCCTTGAGGCTTTTTTAAGCA 418
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 411 GTTTGATGATCTCCGGCGACGACGTCAATTATTTATAGTTCCTTGAGGCTTCTTTAAGCA 470
Query 419 AT 420
||
Sbjct 471 AT 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20107099600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5