BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923954
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135... 1456 0.0
AT1G53887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 115 8e-25
AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146... 111 1e-23
> AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135112-20136970
FORWARD LENGTH=1596
Length=1596
Score = 1456 bits (788), Expect = 0.0
Identities = 1019/1122 (91%), Gaps = 49/1122 (4%)
Strand=Plus/Plus
Query 1 CACCCTCAAGAGTCACCGACATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGC 60
||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 111 CACCCTCAAGAATCGCCGCCATGTGTGGAGGAGCTATAATATCCGATTTCATTCCACCGC 170
Query 61 CGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATC------------------ 102
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 171 CGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTGAAGAAGAATTTGAAAG 230
Query 103 --T-GAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTTGATTTTGACGCTGAGTTCGAGG 159
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 231 GATCGAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTCGATTTTGACGCTGAGTTCGAAG 290
Query 160 CTGATTTCCAAGGTTTCAAAGATGATTCTTCTATTGATTGCGACGATGATTTCGATGTCG 219
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 291 CTGATTTCCAAGGTTTCAAAGATGATTCGTCTATCGATTGCGATGATGATTTCGACGTCG 350
Query 220 GTGATGTTTCCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCGAAA--------C- 270
||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 351 GTGATGTTTTCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCAAAACCCGCCGTCT 410
Query 271 CCGCCG-T-C-GAAGGTTCAGCTTTTGGTAAG-AA---A---G-TT-GATGGGGAAGCTG 318
|||||| | | |||||||||| |||||||||| || | | || |||||||| ||||
Sbjct 411 CCGCCGCTGCGGAAGGTTCAGTTTTTGGTAAGAAAGTTACTGGCTTGGATGGGGACGCTG 470
Query 319 AGAAATCTGGAAAGAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 378
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGAAATCTGCAAATAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 530
Query 379 GCAAATGGGCTGCTGAGATACGTGATCCAAGAGAAGGTGCTAGAATCTGGCTTGGAACTT 438
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 531 GAAAATGGGCTGCTGAGATACGTGATCCAAGGGAAGGTGCTAGAATCTGGCTTGGAACGT 590
Query 439 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGGATCCGTGGAT 498
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 591 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGAATCCGTGGAT 650
Query 499 CTAAAGCTAAGGTGAATTTCCCTGAGGAAAACCCCAAGGCTAGTTCTCAGAAACGCTCTG 558
||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct 651 CTAAAGCTAAGGTGAATTTCCCTGAAGAAAACATGAAGGCTAATTCTCAGAAACGCTCTG 710
Query 559 TGAAGGCTAATCTTCAGAAACCTGTGGCTAAACCTAACCCAAACCCAAGTCCTGCTTTGG 618
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 711 TGAAGGCTAATCTTCAGAAACCAGTGGCTAAACCTAACCCTAACCCAAGTCCAGCTTTGG 770
Query 619 TTCAGAACCT-GAACAACTCCTTTGACAATATGTGTTTCATGGAGGAGGAGAAACACCAA 677
||||||| || ||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 771 TTCAGAA-CTCGAACATCTCCTTTGAAAATATGTGTTTCAT---GGAGGAGAAACACCAA 826
Query 678 CAAGTG-AACAACAACAGCAATCAGTTTGGGTTGACAAACTCCGTTGATGCTGGATGTAA 736
| | |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 827 -GTGAGCAACAACAACAACAACCAGTTTGGGATGACAAACTCCGTTGATGCTGGATGTAA 885
Query 737 CGGGTATCAGTATTTCAGCTCAGACCAGGGTAGTAATTCGTTCGATTGTTCTGAGTTTGG 796
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 886 TGGGTATCAGTATTTCAGCTCTGACCAGGGTAGTAATTCTTTCGATTGTTCGGAGTTTGG 945
Query 797 TTGGAGCGATCAAGCTCCAATAACTCCCGACATCTCTTCTGCGCTTATCAACAGCAACGA 856
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |
Sbjct 946 TTGGAGCGATCAAGCTCCGATAACTCCCGACATCTCTTCTGCGGTTATCAACAACAACAA 1005
Query 857 CTCAGGTCTATTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 916
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CTCAGCTCTGTTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 1065
Query 917 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 1125
Query 977 AACGACTCAGGACAATTGTGCAAACCCTATGGACTTATGGAGCATTGATGAGATTCATTC 1036
|||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 1126 AACGACTCAGGACAATGGTGCAAACCCTATGGACCTATGGAGTATTGATGAAATTCATTC 1185
Query 1037 CATGATCGGAGGAGTCTTCTGAAGAGATCCATTTTCAAGTAA 1078
|||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1186 CATGATTGGAGGAGTCTTCTGAAGAGATCCAGTTTCATGTAA 1227
> AT1G53887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:20122426-20122866
REVERSE LENGTH=441
Length=441
Score = 115 bits (62), Expect = 8e-25
Identities = 70/74 (95%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 1 CACCCTCAAGAGTCACCGACATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGC 60
||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 210 CACCCTCAAGAATCGCCGCCATGTGTGGAGGAGCTATAATATCCGATTTCATTCCACCGC 151
Query 61 CGAGGTCTCGCCGT 74
||||||||||||||
Sbjct 150 CGAGGTCTCGCCGT 137
> AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146-4739136
REVERSE LENGTH=1644
Length=1644
Score = 111 bits (60), Expect = 1e-23
Identities = 81/91 (89%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 20 CATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGCCGAGGTCTCGCCGTGTTAC 79
||||||||||||||||||||||||||||||||| || ||||||||||| | ||| || ||
Sbjct 136 CATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCTCCGCGTCAC 195
Query 80 CAGCGAGTTTATTTGGCCGGATCTGAAGAAA 110
| ||||||||| |||||||||||||| |||
Sbjct 196 TAACGAGTTTATCTGGCCGGATCTGAA-AAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5