BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923976
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:2... 1022 0.0
AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:2... 865 0.0
> AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:20199418-20201729
FORWARD LENGTH=867
Length=867
Score = 1022 bits (553), Expect = 0.0
Identities = 697/764 (91%), Gaps = 20/764 (3%)
Strand=Plus/Plus
Query 12 TATCTTATAATGGGAATCAGCAAAACTGAGATCAGTTTGC-GGAGATTACTTTCTGCTGC 70
||||||| |||||||||| ||||||| || |||| ||| | |||||||||||| |||||
Sbjct 42 TATCTTAAAATGGGAATCGGCAAAACGGAAATCAATTT-CATGAGATTACTTTCAGCTGC 100
Query 71 ACCTAATCAGCAAAATCAGTCTAAGCTTATCCATTATGTTGCTACTTTGAGGGAACAATT 130
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 101 ACCTAATCAGCAAAACCAGTCTAAGCTTATGCATTATGTTGCTACTTTGAGGGAACAGTT 160
Query 131 AGAACAACTCTCTGAAGAGAAGATCCC-TCAAGGGCTTCCCAGAGTTACAAAGGCTAAGG 189
||||||||||| |||||||||| ||| | |||||||||||||||||||||| |||||||
Sbjct 161 GGAACAACTCTCGGAAGAGAAGA-CCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGG 219
Query 190 TGAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTACTCAAGTGACT 248
||||||||||||||||||||||||||||||||| ||| | |||||| | |||||||| ||
Sbjct 220 TGAATGAGTACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAGTTGCTCAAGTGCCT 278
Query 249 GACACAGAGTTATCTTATGAAATTTTTGCAAAGGATTCGACCAGCGATAGTTCTCCCAAA 308
|||||||| ||||| ||||| ||||||||||||||| || | ||||||||||||||||
Sbjct 279 CACACAGAGGTATCTGATGAAGCTTTTGCAAAGGATTCTACTAACGATAGTTCTCCCAAA 338
Query 309 ATAGAAGACGATACACAAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCA 368
||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 339 GTAGAAGACGATACACGAACCCCCAATTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCA 398
Query 369 AGTTCCAAGGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCA 428
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AGTTCCAAAGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCA 458
Query 429 GCTCAAGTGCGC-A-TTGACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 486
|||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GCTCAA--GCGCAAGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 516
Query 487 TGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 546
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 576
Query 547 CAGAAAAGATACTTGACTCTACAGAGGAAACCATTGAGCAAAGCTTGGCAAGCACCGGAC 606
|||||||||||||||| ||||| |||||| |||||||||||||||| |||||||| ||||
Sbjct 577 CAGAAAAGATACTTGATTCTACCGAGGAAGCCATTGAGCAAAGCTTAGCAAGCACAGGAC 636
Query 607 ACGCAGCCGTAAGAGCCACAAAGATATATATTCAGAAAGCTCAAAAACAAGTTGCTTCCA 666
||||| ||||||||||||||||||| | ||||||||||||||||| || |||||||||||
Sbjct 637 ACGCAACCGTAAGAGCCACAAAGAT-T-TATTCAGAAAGCTCAAAGACGAGTTGCTTCCA 694
Query 667 GACTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCTTGTTG 726
| | | | ||||||||| |||||||||| ||||||||||| ||||||||| |||||
Sbjct 695 G--T----G-G-CTCTTGATCCTCGCCATGACATGTGTGTTCATCATGGTTGTCATGTTG 746
Query 727 ATCCGGGTCACATAGAAAATGGTTCGTAGTGTAAACCAAATTAG 770
||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 747 ATCCGAGTCACATAGAAAATGGTTCCTAGTGTAAACCAAATTAG 790
> AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:20620443-20622470
FORWARD LENGTH=975
Length=975
Score = 865 bits (468), Expect = 0.0
Identities = 682/781 (87%), Gaps = 32/781 (4%)
Strand=Plus/Plus
Query 11 TTATCTTATAATGGGAATCAGCAAAACTGAGATCAGTTTGCGGAGATTACTTTCTGCTGC 70
||| || || |||||||| |||||||| ||||||| |||||||||||| ||||| |||||
Sbjct 118 TTA-CTGATGATGGGAATAAGCAAAACGGAGATCAATTTGCGGAGATTGCTTTCCGCTGC 176
Query 71 ACCTAATCAGCAAAATCAGTCTAAGCTTATCCATTATGTTGCTACTTTGAGGGAACAATT 130
|||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 177 ACCTAACCAGCAAAATCAGTCGAAGCTTATGCATTATGTTGCTACATTGAGGGAACAATT 236
Query 131 AGAACAACTCTCTGAAGAGAAGATCCCTCAAGGGCTTCCCAGAGTTACAAAGGCTAAGGT 190
|||||||||||| ||||| || | |||| |||| ||||||||||||||||||||||||||
Sbjct 237 AGAACAACTCTCCGAAGAAAAAACCCCTGAAGGCCTTCCCAGAGTTACAAAGGCTAAGGT 296
Query 191 GAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTACTCAAGTGACTG 249
||||||||||||||||||||||||||||||||||| | || ||||| |||||| | |||
Sbjct 297 TAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCCAAGA-TAGCTTCTCAAGAGCCTG 355
Query 250 ACACAGAGTTATCTTATGAAATTTTTGCAAAGGATTCGACCAGCG-ATAGTTCTCCCAAA 308
| |||||| ||||| ||||| |||||||| |||||||| || | | || || || |||
Sbjct 356 AGACAGAGGTATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGA-AGCTCACCAAAA 414
Query 309 ATAGAAGACGATACACAAAGCCCCACTTCTCCACAGCTGAGAAGAAGAATCGTGCCTGCA 368
|||||||| || | | |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 415 ATAGAAGATGAGCCTCGAAGCCCCACTTCGCCACAGCTGAGAAGAAGAATCGTCCCTGCA 474
Query 369 AGTTCCAAGGAGCAAAGCTATGA--C-GCTGATCC-----C-TCAAAACCAATAAAACTA 419
||||||||||||||||||| ||| | |||||| | | ||||||||||||||||||
Sbjct 475 AGTTCCAAGGAGCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTA 534
Query 420 GACACCGCAGCTCAAGTGCGCATTGACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGAT 479
|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct 535 GACACCGCAGCTCAAGCGCACATTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGAT 594
Query 480 GAAATGGTGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTG 539
||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||
Sbjct 595 GAAATGGTGGTACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATTAGTCAATCTGTG 654
Query 540 CAAAATACAGAAAAGATACTTGACTCTACAGAGGAAACCATTGAGCAAAGCTTGGCAAGC 599
||||||||||||||||||||||||||||| ||||| |||||||||||||| | || |||
Sbjct 655 CAAAATACAGAAAAGATACTTGACTCTACCGAGGAGGCCATTGAGCAAAGCCTAGCGAGC 714
Query 600 ACCGGACACGCAGCCGT-AAGAGCCACAAAGATATATATTCAGAAAGCTCAAAAACAAGT 658
|| |||||||| | | |||||| |||||||||||| | || |||||||||| ||||||
Sbjct 715 ACAGGACACGC-GACAACAAGAGCGACAAAGATATAT-T-CACAAAGCTCAAAGACAAGT 771
Query 659 TGCTTCCAGACTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATGGTTG 718
||||||||| | | | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 772 TGCTTCCAG--T----G-G-CTCTTGATCTTCGCCATGATCTGTGTGTTCATAATGGTTG 823
Query 719 T-CTTGTTGATCCGGGTCACATAGAAAATGGTTC-GTAGTGTAA-ACCAAATTAGTGAAA 775
| || |||||||||||||||||||||| || ||| | | ||||| |||||||||||||||
Sbjct 824 TTCT-GTTGATCCGGGTCACATAGAAATTG-TTCAG-ATTGTAATACCAAATTAGTGAAA 880
Query 776 T 776
|
Sbjct 881 T 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5