BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923979
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolo... 3459 0.0
AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolo... 1722 0.0
> AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog
3 | chr1:20210873-20213942 FORWARD LENGTH=2633
Length=2633
Score = 3459 bits (1873), Expect = 0.0
Identities = 2069/2167 (95%), Gaps = 0/2167 (0%)
Strand=Plus/Plus
Query 17 GAGTTTCAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCACTGTAT 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAGTTTCAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCACTGTAT 356
Query 77 GTTCCACAGCTCACCAGATCAACGCTCATATCTCTTGTGATCTCGATCTGAACTCTAGAT 136
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 357 GTTCCACAGCTCACCAAATCAACGCTCATATCTCATGTGACCTCGATCTGAACTCTAGAT 416
Query 137 CTTCATCGGCGTCTTCTTCGACGAGTTCTCCGACTATCGGAGGTCTCTCTTTGCTTTTCT 196
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CTTCATCGGCGTCTTCTTCCACGAGTTCGCCGACTATCGGAGGTCTCTCTTTGCTTTTCT 476
Query 197 CCGGCGCTTCCGTCAAATCATCGTCGTCTTCTTCCTCATCGCATCCAACGGTAGGAGAGG 256
|||||||||||||||||||||| || ||||||||||||||||||||| | ||||||||||
Sbjct 477 CCGGCGCTTCCGTCAAATCATCTTCCTCTTCTTCCTCATCGCATCCATCCGTAGGAGAGG 536
Query 257 AATTAGCTTCAATACGTCATGATCGAAGCGAGGATCGAACTTTAAGCGGCTCCTTGTGTT 316
|||||||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||
Sbjct 537 AATTAGCTTCAATACGCCATGATCGTAGCGAGGATCGGACCTTAAGCGGATCCTTCTGTT 596
Query 317 ATTCTCCGAGCAAATTCATCGGTTCTTCATATCTTAAACGAGATCACCAAAGCCCTGTCT 376
||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 597 ATTCTCCGAGCAAATTCATTGGTTCTTCATACCTAAAACGAGATCATCAAAGCCCTGTCT 656
Query 377 CGGTGCTTCTCGGTCCAATTTCATCTGGTAGCAGTCCTCCGATGAGAATTTCACGCGATC 436
||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 657 CGGTGCTTCACGGTCCAATTTCATCTGGTAACAGTCCTCCGATGAGGATTTCACGCGATC 716
Query 437 GGAACTTAGATGGTGGATCTTCTCTTCGTGTAGGATCTAGCAGATTGTTCAATGGTTTCG 496
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGAACTTAGATGGTGGATCTGCTCTTCGTGTAGGATCTAGCAGATTGTTCAATGGTTTCG 776
Query 497 TCAGGAAAGCGATAGGTTCTTGTGTTGATTACGATACAGACTCTGTTCTTGTCGATGAGC 556
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCAGGAAAGCGATAGGTTCATGTGTTGATTACGATACAGACTCTGTTCTTGTCGATGAGC 836
Query 557 AGCTACCGTTTACCATGGACGATGGTTACGAAGGAGAAAGAAGACATCCATATGCTAGGG 616
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 837 AGCTACCGTTTACCATGGACGATGGTTTCGAAGGAGAAAGAAGACAACCATATGCTAGGG 896
Query 617 ATTTGCTTAGGCGTGCTCAATTGAAACATAAAATCTTCGAAGATGAATCTGTGATCAAAG 676
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 897 ATTTGCTTAGACGTGCTCAATTGAAACACAAAATCTTCGAAGATGAATCTGTGATCAAAG 956
Query 677 CATTTTACGAAGCTGAGAAAGCTCATAGAGGACAGATGAGAGCAAATGGTGATCCTTACC 736
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 957 CATTTTACGAAGCTGAGAAAGCTCATAGGGGACAGATGAGAGCAACTGGTGATCCATACC 1016
Query 737 TGCAACATTGTGTTGAGACTGCGATGTTGTTAGCTGACATTGGAGCTAATTCGACTGTTG 796
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1017 TGCAACATTGTGTGGAGACTGCAATGTTGTTGGCTGACATTGGAGCTAATTCGACTGTTG 1076
Query 797 TTGTAGCTGGAATTTTACATGATACTTTAGACGATTCGTTTATGAGCTATGATTATATTC 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTGTAGCTGGAATTTTACATGATACTTTAGACGATTCGTTTATGAGCTATGATTATATTC 1136
Query 857 TCAGAACTTTTGGATCAGGAGTTGCTGATCTTGTGGAAGGGGTGTCTAAGCTTAGCCAAT 916
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 1137 TCAGAACTTTTGGATCAGGAGTTGCTGATCTTGTGGAAGGGGTCTCTAAGCTGAGCCAGT 1196
Query 917 TAAGTAAACTTGCTCGGGAAAACAATACGGCTTGTAAAACCGTTGAAGCAGATCGTTTGC 976
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1197 TAAGTAAACTTGCTCGGGAGAACAATACCGCTTGTAAAACCGTAGAAGCAGATCGTTTGC 1256
Query 977 ACACTATGTTTCTTGCAATGGCAGATGCGAGAGCTGTTCTTATAAAGTTAGCTGATCGGT 1036
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1257 ACACTATGTTTCTTGCAATGGCAGACGCCAGAGCTGTTCTTATAAAGTTAGCTGATCGGT 1316
Query 1037 TACACAACATGATGACTCTCTATGCTTTGCCACCAGTGAAGCAGCAAAGGTTTGCTAAAG 1096
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct 1317 TACACAACATGATGACTCTATATGCTTTGCCACCAGTGAAGCGGCAAAGGTTTGCCAAAG 1376
Query 1097 AGACTCTCGAGATATTTGCGCCTTTGGCTAATCGTTTGGGAATCTCTAGCTGGAAAGTTG 1156
| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1377 AAACTCTAGAGATATTTGCGCCTTTGGCTAATCGTTTGGGAATTTCTAGCTGGAAAGTTA 1436
Query 1157 AGCTTGAAAATATGTGTTTCAAGCATCTCTATCCTGATCAGCACCATGAGATGTCTGATA 1216
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1437 AGCTTGAAAATCTGTGTTTTAAGCATCTCCATCCTGATCAGCACCATGAGATGTCCGATA 1496
Query 1217 TGCTTGAGGATTCATTCAATGAAGCTATGATTACTTCCGCGATTGGGAAATTGGAGCAAG 1276
||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1497 TGCTTGAGGATTCATTCGATGAAGCTATGATTACTTCTGCGATTGAGAAATTGGAGCAAG 1556
Query 1277 CGCTTAAGAAAGAAGGCATTTCTTACCATGTTCTATCTGGACGACACAAGAGCTTGTATA 1336
||||||||||||||||||| |||||||||||| | |||||||| |||||||| |||||||
Sbjct 1557 CGCTTAAGAAAGAAGGCATCTCTTACCATGTTGTCTCTGGACGGCACAAGAGTTTGTATA 1616
Query 1337 GTATCTACTGCAAGATGTTGAAGAAAAAGCTAACCATGGATGAAATCCATGATATTCATG 1396
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1617 GTATCTACTGCAAGATGTTGAAGAAAAAGCTAACCATGGATGAAATTCATGATATTCATG 1676
Query 1397 GCTTACGTTTGATTGTTGACAATGAGAAAGATTGTTACAAGGCCTTAGGAGTAGTTCACA 1456
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1677 GCTTACGTTTGATTGTTGACAATGAGAAAGATTGTTACAAGGCCTTGGGAGTAGTTCACA 1736
Query 1457 AGCTATGGTCTGAAGTTCCTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACG 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AGCTATGGTCTGAAGTTCCTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACG 1796
Query 1517 GGTACCAATCTTTGCATACTGTAGTAATGGGTGATGGAACTATTCCGCTTGAAGTTCAAA 1576
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1797 GGTACCAATCTTTGCATACTGTAGTGATGGGTGATGGAACTATTCCGCTGGAAGTTCAAA 1856
Query 1577 TACGAACAAAGGAGATGCATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACA 1636
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TACGGACAAAGGAGATGCATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACA 1916
Query 1637 AGGAAGGTGACTGCAAGCATTCATCATTTGTGCTTCAGATGGTTGAATGGGCAAGATGGG 1696
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1917 AGGAAGGTGACTGCAAACACTCATCGTTTGTGCTTCAAATGGTTGAATGGGCAAGATGGG 1976
Query 1697 TCGTGACCTGGCATTTCGAAACCATGAGCAAAGATAGATCCTCGATCTGCTCTTCCGAGC 1756
| |||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 1977 TTGTGACCTGGCATTTTGAAACCATGAGCAAAGACGGATCGTCGATCTGCTCTTCTGAGC 2036
Query 1757 CTTTATGCAGTTTCCCGTCTCACGCTGAAGACTGTCCGTTTTCATATAAGCCTAATGGTA 1816
| || |||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2037 CCTTGTGCAGTTTCCCGTCTCACGCAGAAGACTGTCCGTTTTCATATAAGCCTAGTGGTA 2096
Query 1817 ACCAAGAAGGACCAGTCTATGTCATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGT 1876
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2097 ACCAAGAAGGACCAGTCTATGTGATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGT 2156
Query 1877 TTCCCGCGAATTCCACAGTCTCGGACCTGTTAAGCAGAGCAGGACCAGGGAGCTCGAGAT 1936
|||||| |||||| || || |||||||||||| |||||||||||||||||||||||||||
Sbjct 2157 TTCCCGAGAATTCTACCGTGTCGGACCTGTTACGCAGAGCAGGACCAGGGAGCTCGAGAT 2216
Query 1937 GGTCAATGTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTAAACCAGACACCTG 1996
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2217 GGTCAATGTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTTAACCAGACACCTG 2276
Query 1997 TAAATGATCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCTATAC 2056
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2277 TAAGTGATCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCCATAC 2336
Query 2057 CTGACAAGTCTCTGACTGAATACAGAGAAGAGATTCAACGAATGTATGATCGAGGGCTTG 2116
|||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 2337 CTGACAAGTCTCTGACTGAATACAGAGAGGAAATTCAGCGGATGTATGATCGAGGGCTTG 2396
Query 2117 CGTTTTCACGCCCTCACCGTGCAGCTGCGGGTACCATGGTTGGCTGGGGGAGCTAACAGA 2176
|||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||| ||
Sbjct 2397 CGTTTTCACGGCCTCACCGTGCAGCTACTGGTACCATGGTTGGCTGGGGAAGCTAACTGA 2456
Query 2177 TTCTCTT 2183
|||||||
Sbjct 2457 TTCTCTT 2463
> AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolog
2 | chr3:4650757-4653914 REVERSE LENGTH=2675
Length=2675
Score = 1722 bits (932), Expect = 0.0
Identities = 1782/2173 (82%), Gaps = 135/2173 (6%)
Strand=Plus/Plus
Query 23 CAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCA-CTGTATGTTCC 81
|||||||||| || ||||| ||||| ||||||||||||||| | |||| | || ||||||
Sbjct 399 CAATGGTGGTGGCGACGACTATAGCACTTTACGCGAGTCCACCAAGCAGC-GTTTGTTCC 457
Query 82 ACAGCTCACCAGATCAACGCTCATATCTCTTGTGATCTCGATCTGAACTCTA-GATCTTC 140
|| || || | ||| | | ||||| |||||||||||||| | ||| | || |||
Sbjct 458 AC-GC-CA-C--ATC-A-G-----ATCTCATGTGATCTCGATCTCACCTCCAGGA-GTTC 504
Query 141 ATCGGCGTCTTCTTCGACGAG-TT-CT---C-C-G--A-CTATC---GGAGGTCTCTCTT 187
|| | || ||||| | | | || || | | | | | ||| |||||||||||||
Sbjct 505 GTCAACATCCTCTTCCATG-GCTTCCTCGCCGCAGAAACCAATCGTTGGAGGTCTCTCTT 563
Query 188 TGCTTTTCTCCGGCGCTTCCGTCAAATCATCGTCGTCTTCTTCCTCAT-CGCAT-C-CAA 244
||||||||| |||| || |||||||| | || ||||||||||| | | ||| | |||
Sbjct 564 CACTTTTCTCCAGCGCATCAGTCAAATC-T--TCATCTTCTTCCTCTTGCTCATACTCAA 620
Query 245 -CGGTAGGAGAGGAATTAGCTTCAATACGTC-ATGATC-GA---A-G---CG-AGGATC- 292
||| || ||| || || ||||| |||| | |||||| || | | | | ||||
Sbjct 621 CCGG-AGTAGATGAGTTCTCTTCACTACG-CTATGATCGGAGTGATGATTTGAAAGATCT 678
Query 293 GAACTTTAAGCGGCTCC-TTGTGTTATTCTCCGAGC-AAATTCATCGGT-TCTTCATATC 349
|| |||| ||| ||||| ||| ||||||||||| || ||||| | || ||| ||
Sbjct 679 GAGCTTT-AGCAGCTCCTTTG-GTTATTCTCCG-GCGAAATT--T--GTGAATTC--AT- 728
Query 350 TTAAACGAGATCACCAAAGCCCTGTCTCGGTGCTTC-TCGGTCCAATTTCATCTGGTAGC 408
||| ||||||||||||||||||| |||| ||||||| | ||||| | || | | || |
Sbjct 729 TTAGACGAGATCACCAAAGCCCTATCTCTGTGCTTCAT-GGTCCGGTCTCGTGTAGTTGT 787
Query 409 AGTCCTCCGATGAGAATTTCACGCGATCGGAACT-TAGATGGTGGATCTTCTCTTCGTGT 467
|| |||||||||||||| || || |||||||| | |||||||| || | ||||| |
Sbjct 788 AGCCCTCCGATGAGAATGTCTCGTGATCGGAA-TCTAGATGGT---TC--GT-TTCGTTT 840
Query 468 AGGATCTAGCAGATTGTTCAATGGTTTCGTCAGGAAAGCGATAGGTTCTTGTGTTGATTA 527
|||| |||| ||||||||||||||||||| |||||||| | || || |||||||||||
Sbjct 841 AGGAGCTAGTGGATTGTTCAATGGTTTCGTTAGGAAAGCTCTTGGATCATGTGTTGATTA 900
Query 528 CGA-TACAGACTCTG-TTC--TTGTCGATGA-GCAGCTACCGTTTACC-ATGGACGATGG 581
||| | | || || | ||| || ||| ||| | ||||| ||||| || || | || ||
Sbjct 901 CGAGTTCGGA-TCGGATTCTGTTCTCGTTGATG-AGCTAACGTTT-CCTAT-G--GA-GG 953
Query 582 TTACGAAGGA-GAAAGAAGACATCCATATGCTAGGGATTTGCTTAGGCGTGCTCAATTGA 640
|| | | | || | ||| |||||||||||||||||||| || ||||| |||||||
Sbjct 954 TT--G-A-TACGATA-AAG----CCATATGCTAGGGATTTGCTAAGACGTGCACAATTGA 1004
Query 641 AACATAAAATCTTCGAA-GATGAATCTGTGATCAAAGCATTTTACGAAGCTGAGAAAGCT 699
||| || || ||| || |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 1005 GACACAAGATTTTC-AATGATGAATCTGTGATCAAAGCTTTTTATGAAGCAGAGAAAGCT 1063
Query 700 CATAGAGGACAGATGAGAGCAAATGGTGATCCTTACCTGCAACATTGTGTTGAGACTGCG 759
||||||||||| |||||||| | | ||||||||||||| || |||||||||||||||||
Sbjct 1064 CATAGAGGACAAATGAGAGCTAGTCGTGATCCTTACCTTCAGCATTGTGTTGAGACTGCT 1123
Query 760 ATGTTGTTAGCTGACATTGGAGCTAATTCGACTGTTGTTGTAGCTGGAATT-TTACATGA 818
|||||||| ||| | || |||||||| || ||||||||||| ||||| || || |||||
Sbjct 1124 ATGTTGTTGGCTAATATCGGAGCTAACTCAACTGTTGTTGTTGCTGGCCTTCTT-CATGA 1182
Query 819 TA-CTTTAGACGATTCGTTT-ATGAGCTATGATTATATTCTCAG-AACTTTTGGATCAGG 875
|| | || |||||||| ||| ||||||||||||||||||||||| ||| || ||| ||||
Sbjct 1183 TACCATT-GACGATTC-TTTCATGAGCTATGATTATATTCTCAGAAAC-TTCGGAGCAGG 1239
Query 876 AGTTGCTGATCTT-GTGGAAGGGGTGTCTAAGCTTAGCCAATTAAGTAAACTTGCTCGGG 934
|||||||||| || || |||||||| || |||||||||||||| || ||||| ||| | |
Sbjct 1240 AGTTGCTGAT-TTGGTTGAAGGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAG 1298
Query 935 AAAACAATACGGCTTGTAAAACCGTTGAAGCAGATCGTTTGCACACTATGTTTCTTGCAA 994
| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1299 AGAACAATACGGCGTGTAAAACTGTTGAAGCAGATCGTTTGCACACAATGTTTCTTGCAA 1358
Query 995 TGGCAGATGCGAGAGCTGTTCTTATAAAGTTAGCTGATCGGTTACACAACATGATGACTC 1054
|||||||||| ||||||||||||||||| | |||||||| ||||||||||||| ||| |
Sbjct 1359 TGGCAGATGCAAGAGCTGTTCTTATAAAACTGGCTGATCGATTACACAACATGAAGACGC 1418
Query 1055 TCTATGCTTTG-CCACCAGTGAAGCAGCAAAGGTTTGCTAAAGAGAC-TCTCGAGATATT 1112
| || |||||| || |||||||||||||| ||||||||||||||||| | | || |||||
Sbjct 1419 TTTACGCTTTGTCC-CCAGTGAAGCAGCAGAGGTTTGCTAAAGAGACGT-TGGAAATATT 1476
Query 1113 TGCGCCTTTGGCTAATCGTTTGGGAATCTCTAGCTGGAAAGTTGAGCTTGAAAATATGTG 1172
||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||
Sbjct 1477 TGCACCTTTGGCTAATCGTTTGGGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTG 1536
Query 1173 TTTCAAGCATCTCTATCCTGATCAGCACCATGAGATGTCTGAT-ATGCTTGAGGATTCAT 1231
|||||| ||||| || || | ||||| |||||||||| | ||||| ||||||||||
Sbjct 1537 TTTCAAACATCTTTACCCAAACCAGCATAATGAGATGTCA-ACCATGCTCGAGGATTCAT 1595
Query 1232 TCAATGAAGCTATGATTACTTCCGCGATTGGGAAATTGGAGCAAGCGCTTAAGAAAGAAG 1291
|| ||||||| ||||||||||| || || | ||||||||||||||| |||||||||| ||
Sbjct 1596 TCGATGAAGCCATGATTACTTCTGCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGCAG 1655
Query 1292 GCATTTCTTACCATGTTCTATCTGGACGACACAAGAGCTTGTATAGTATCTACTGCAAGA 1351
|||||||||| |||||||| | ||| || |||||||||||||||||||| ||| ||||||
Sbjct 1656 GCATTTCTTATCATGTTCTTTGTGGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGA 1715
Query 1352 TGTTGAAGAAAAAGCTAACCA-TGGATGAAATCCATGATATTCATGGCTTACGTTTGATT 1410
|||| |||||||||||||| | |||||||||| ||||| |||||||| ||||||||||||
Sbjct 1716 TGTTAAAGAAAAAGCTAAC-AGTGGATGAAATTCATGACATTCATGGGTTACGTTTGATT 1774
Query 1411 GTTGACAATGA-GAAAGATTGTTACAAGGCCTTAGGAGTAGTTCACAAGCT-ATGGTCTG 1468
|||||||| || | | ||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 1775 GTTGACAACGAAGGA-GATTGTTACAAGGCCTTAGGAGTAGTTCATA-GTTTATGGTCTG 1832
Query 1469 AAGTTCCTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACGGGTACCAATCTT 1528
||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||||
Sbjct 1833 AAGTTCCTGGAAAGCTGAAGGATTACATAACTCATCCCAAATTCAACGGGTATCAATCTT 1892
Query 1529 TGCATACTGTAGTAATGGGTGATGGAACTA-TTCCGCTTGAAGTTCAAATACGAACAAAG 1587
|||| || ||||| |||| ||||||| | |||| |||||||| |||||||| ||| ||
Sbjct 1893 TGCACACGGTAGTGATGGACAATGGAAC-AGTTCCACTTGAAGTCCAAATACGTACACAG 1951
Query 1588 GAGATGCATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACAAGGAAGGTGAC 1647
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1952 GAGATGCATTTGCAAGCAGAATTTGGGTTTGCAGCTCATTGGAGATACAAGGAAGGTGGC 2011
Query 1648 TGCAAGCATTCATCATTTGTGCTTCAGATGGTTGAATGGGCAAGATGGGTCGTGACCTGG 1707
||||| | || || |||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 2012 TGCAAATACTCTTCGTTTGTGCTTCAGATGGTTGAATGGGCTCGGTGGGTCGTAACCTGG 2071
Query 1708 CATTTCGAAACCATGAGCAAAGATAGATCCTCGATCTGCTCTTCCGAG-CCTTTA----- 1761
|||| |||| | ||||||||||| |||| || || | ||||| || || | |
Sbjct 2072 CATTGCGAAGCAATGAGCAAAGACCGATCTTCCATAAGTTCTTCAGATTCCATCAAACCC 2131
Query 1762 --T-GCA-GTTTCCCGTCTCACGCTGAAGACTGTCC-GTTTTCATATAAGCCTAATGGTA 1816
| ||| |||||| ||||||| |||| ||||| || | || | || |||||||| |||
Sbjct 2132 CCTTGCAAGTTTCC-GTCTCACTCTGAGGACTGCCCAGCTT-CTTACAAGCCTAACAGTA 2189
Query 1817 ACCAAGAAGGACCAGTCTATGTCATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGT 1876
||| || |||||||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 2190 GCCAGGATGGACCAGTCTATGTCATTGTAATCGAAAATGATAAGATGTCTGTGCAAGAAT 2249
Query 1877 TTCCCGCGAATTCCACAGTCTCGGACCTGTTAAGCAGAGCAGGACCAGGGAGCTCGAGAT 1936
|||| |||| ||| ||||||||||| ||| | ||| | || || |||||||||||||| |
Sbjct 2250 TTCCAGCGAGTTCAACAGTCTCGGATCTGCTGAGCCGGGCGGGGCCAGGGAGCTCGAGGT 2309
Query 1937 GGTCAATGTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTAAACCAGACACCTG 1996
|||| ||||| |||| || ||||||||||| |||||||||||||| ||||| | |||||
Sbjct 2310 GGTCCATGTATGGCATACCAGCAAAGGAAGAACTAAGGCCAAGACTGAACCAAATACCTG 2369
Query 1997 TAAATGATCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCTATAC 2056
||| ||| || || || |||||||||||||| ||||||||||||||||||||| | || |
Sbjct 2370 TAAGTGACCTCAAGTGGAAGCTGAAGATGGGTGATGTGGTGGAGCTGACTCCAACAATTC 2429
Query 2057 CTGACAAGTCTCTGACTGAATACAGAGAAGAGATTCAACGAATGTATGATCGAGGGCTTG 2116
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 2430 CTGATGAGTCTCTGACTGAATACAGAGAAGAGATTCAACGCATGTATGATCGAGGACTCG 2489
Query 2117 CGTTTTCACGCCC 2129
||||||| |||||
Sbjct 2490 CGTTTTCCCGCCC 2502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108834781560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5