BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923991

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54230.1 | Symbols:  | Winged helix-turn-helix transcription...   313    1e-84


> AT1G54230.1 | Symbols:  | Winged helix-turn-helix transcription 
repressor DNA-binding | chr1:20250518-20252365 FORWARD LENGTH=1094
Length=1094

 Score =  313 bits (169),  Expect = 1e-84
 Identities = 240/272 (88%), Gaps = 14/272 (5%)
 Strand=Plus/Plus

Query  74   GTATACGTTAAGTTTAGATGATATGGTTTTGGAAGCTTTATCAACAATCGATGATGAACA  133
            ||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  214  GTACACGTTAAGTTTAGATGATATGGTTTTTGAAGCTTTATCAACAATAGATGATGAACA  273

Query  134  TGATGGATCTGGTCGTGATGTCGATGGGATTTTCGAATATAACAATGAACGGTACGTAAT  193
            ||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||| ||
Sbjct  274  TGATGGAACTGGTCGTGATGTCGATGGGATTTTCAAATTTAACAATGACCGGTACGTGAT  333

Query  194  ACCGGAAAATGT-TAGGGAGCTATTGAAAGACGAGCTTGAAAAACTAATTGCTGAAAGGA  252
            |||||| ||| | |||||||| ||||| || |||| ||||||||||| |||||||||| |
Sbjct  334  ACCGGATAAT-TCTAGGGAGCGATTGAGAGGCGAGGTTGAAAAACTAGTTGCTGAAAGAA  392

Query  253  AAATAGAGAAGGTAGGAAACCGCTACACGAT-A--ATGCCCCAACGTGTTCCTACCACAG  309
            ||||||||||||||||||||||||||| ||| |  ||||||||||||||||||      |
Sbjct  393  AAATAGAGAAGGTAGGAAACCGCTACATGATGATGATGCCCCAACGTGTTCCT------G  446

Query  310  CAGCTACTGGAGAAGATTCCACAATGCCACAA  341
            |   |||| ||||||||||||||| |||||||
Sbjct  447  C---TACTAGAGAAGATTCCACAACGCCACAA  475


 Score =  222 bits (120),  Expect = 3e-57
 Identities = 171/194 (88%), Gaps = 9/194 (5%)
 Strand=Plus/Plus

Query  352  GTACTTCTCTCGTACCAAGAGCACCAGAAGAAAATCCTCAGATAGACGCAGTAGCAAAAG  411
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  660  GTACTTCTCTCGTACCAAGAGCACCAGAAGAAAATCCTCAGATGGACGCAGTAGCAAAAT  719

Query  412  TAGTCGCAGAGGCAGAAAATTTTGAGTTCCAAGCGAAAGAGGCACAAGAACTTGTC-GAT  470
            || |||| ||||||||| | || ||||||||||| ||||||||||||||||||| | |||
Sbjct  720  TAATCGCCGAGGCAGAACACTTGGAGTTCCAAGCAAAAGAGGCACAAGAACTTG-CAGAT  778

Query  471  AGACACAGCC-AGATGCTAGATTTAGA--G--AGATTATTCTTGGAGTTAGCCGTAGAAA  525
            | |||| ||| || ||||||| |||||  |  |||| || |||| |||||||||||||||
Sbjct  779  AAACAC-GCCCAGTTGCTAGAATTAGAAAGCGAGATAAT-CTTGCAGTTAGCCGTAGAAA  836

Query  526  TCCTTAACCGATGT  539
            || |||||||||||
Sbjct  837  TCTTTAACCGATGT  850


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 134/158 (85%), Gaps = 6/158 (4%)
 Strand=Plus/Plus

Query  385  ATCCTCAGATAGACGCAGTAGCAAAAGTAGTCGCAGAGGCAGAAAATTTTGAGTTCCAAG  444
            ||||||||  ||| |||||||||||| ||||||||||| ||||| | || ||||||||||
Sbjct  480  ATCCTCAGGCAGAAGCAGTAGCAAAACTAGTCGCAGAGACAGAACACTTAGAGTTCCAAG  539

Query  445  CGAAAGAGGCACAAGAACTTGTC-GATAGACACAGCCAGATGCTAGATTTAGAGA-G-AT  501
            | |||||||| |||||||||| | |||||| ||||   ||||||| |||  || | | | 
Sbjct  540  CAAAAGAGGCTCAAGAACTTG-CAGATAGATACAGTTTGATGCTAAATTCCGA-ATGCA-  596

Query  502  TATTCTTGGAGTTAGCCGTAGAAATCCTTAACCGATGT  539
            || |||||||||||||||||||||||||||||||||||
Sbjct  597  TAATCTTGGAGTTAGCCGTAGAAATCCTTAACCGATGT  634



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5