BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923999
Length=355
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54260.1 | Symbols: | winged-helix DNA-binding transcriptio... 414 2e-115
> AT1G54260.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr1:20256936-20259417 FORWARD LENGTH=1111
Length=1111
Score = 414 bits (224), Expect = 2e-115
Identities = 254/269 (94%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 5 TGCAAGGTATGATGCAATGGTTTTTGAGGCTATATCAACAATTAATGATGAAAATGGTTC 64
||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 288 TGCTAGGTATGATGCGATGGTTTTTGAGGCTGTATCAACAATTAATGATGAAAATGGTTC 347
Query 65 TAATCTCAAGGAGATTCTCAGCTTTGTCGAGGAACAACATGAGGTTCCACAAAACTTTAA 124
|||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 348 CAATCTCAAAGAGATTCTCAGATTTATCGAGGGACAACATGAGGTTCCACAAAACTTTAA 407
Query 125 GAGACTGTTGAGTTATAGCCTGAGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTACG 184
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 408 GAAACTGTTGAGTTATAGCCTGGGAATCCTTGTTTCTCAAGACAAACTCAAAAAGGTACG 467
Query 185 AAATCGTTACAAAATCTCAGTTACGAAAGCAATGAAGCCAACACTCACCTTGTGTCCAAA 244
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 468 AAATCGTTACAAAATCTCAGTTACGAAAGCAATTAAGCCAACACTCACCCTGCGTCCAAA 527
Query 245 AGATTCCAAGAAGCCACCAGAGCTACCAA 273
|||||||| ||||||||||||| ||||||
Sbjct 528 AGATTCCACGAAGCCACCAGAGTTACCAA 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16638624919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5