BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924005

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55070.1 | Symbols:  | F-box and associated interaction doma...   121    5e-27


> AT1G55070.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:20551452-20552633 FORWARD LENGTH=1182
Length=1182

 Score =  121 bits (65),  Expect = 5e-27
 Identities = 121/145 (83%), Gaps = 15/145 (10%)
 Strand=Plus/Plus

Query  124  GACATTATTATGTTCACCGTTATCTTAAGGGGATATGCGTCAATGGTGTTTTGTATTATG  183
            |||||||||||   |||||||||| ||||||||||||| |||| ||||||||||||||  
Sbjct  677  GACATTATTATACCCACCGTTATCATAAGGGGATATGCATCAAAGGTGTTTTGTATTA--  734

Query  184  CTGCAGCAAGCTCTATG----C-A-------ACCTGTGATCGTTTGCTTTGACGTTAGGT  231
             |||||||| |||||||    | |       |||| ||||||||||||||||||||||||
Sbjct  735  -TGCAGCAACCTCTATGAAACCTATGTTGGGACCTATGATCGTTTGCTTTGACGTTAGGT  793

Query  232  CTGAGAAATTTGATTTTATTACTTG  256
            |||||||||||| ||||||||||||
Sbjct  794  CTGAGAAATTTGGTTTTATTACTTG  818



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5