BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924010

Length=1048
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08263.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...  84.2    2e-15


> AT4G08263.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; BEST Arabidopsis 
thaliana protein match is: DNA-binding storekeeper protein-related 
transcriptional regulator (TAIR:AT4G00610.1); Has 
52 Blast hits to 52 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr4:5211604-5212137 
REVERSE LENGTH=330
Length=330

 Score = 84.2 bits (45),  Expect = 2e-15
 Identities = 49/51 (96%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  179  CGCATCTCTAGCGAAGAAGCCGTTGGAAGTCGTCGCATCGACTTCGAAGAA  229
            ||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  47   CGCATCTCTGGCGAAGAAGCCGTTGGAAGTCGTCGCATCAACTTCGAAGAA  97



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51389532381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5