BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924024
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55190.1 | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab acc... 966 0.0
> AT1G55190.1 | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab acceptor)
family protein | chr1:20588397-20589199 FORWARD LENGTH=803
Length=803
Score = 966 bits (523), Expect = 0.0
Identities = 578/604 (96%), Gaps = 6/604 (1%)
Strand=Plus/Plus
Query 6 tctcttctctctcC-GAAATGACGAACTACGGCGCGATTCCGACGTCGTCTCATCCATCA 64
|||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 38 TCTC-TCT-TCTCCAAAAATGACGAACTACGGGGCGATTCCGACGTCGTCTCATCCATCA 95
Query 65 CCGGCGATAGATCTCGAATACATCTCACGCGCCAAACACCGTATAAAATCCGGTCTAGCC 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 CCGGCGATAGATCTCGAATACATCTCACGCGCCAAACACCGTATAAAATCCGGTCTAGCT 155
Query 125 ACGCGCCGGCCATGGAAATCAATGTTCGATTTCGAATCAATGACTCTCCCACACGGATTC 184
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 156 ACGCGCCGCCCATGGAAATCAATGTTCGATTTCGAATCAATGACTCTCCCTCACGGTTTC 215
Query 185 TTCGACGCGATCTCGAGGATCAAAACGAATCTCGGCTATTTCAGAGCAAATTACGCCATC 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 216 TTCGACGCGATCTCGAGGATCAAAACGAATCTCGGCTATTTCAGAGCTAATTACGCCATC 275
Query 245 GGAGTTCTCTTCATCCTCTTCCTAAGCCTTCTCTATCACCCAACGTCGTTAATCGTGTTG 304
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 276 GGAGTTCTCTTCATCCTCTTCCTAAGCCTTCTATATCACCCAACCTCGTTGATCGTGTTA 335
Query 305 TCAATCTTGGTCGTCTTCTGGATCTTTCTCTATTTCCTCCGTGACGAGCCTCTTGTGGTT 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 336 TCAATCTTGGTCGTCTTCTGGATCTTTCTCTATTTCCTCCGTGACGAGCCTCTTGTTGTT 395
Query 365 TTCGGTTATCAGATTGATGATCGGACGGTTCTCATTGGTTTATCGGTTTTCACGGTTGTG 424
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 396 TTTGGTTATCAGATTGATGATCGGACGGTTCTTATTGGTTTATCGGTTTTGACGGTTGTG 455
Query 425 ATGCTTTTGTTGACTCACGCTACGTCGAATATTCTGGGATCTTTGTTAACCGCCGCCGTG 484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 456 ATGCTTTTGTTGACTCACGCTACTTCGAATATTCTGGGATCTTTGTTAACCGCCGCCGTG 515
Query 485 TTGGTTCTGATCCATGCGGCGGTTAGAAGAAGTGATAATTTGTTTCTTGATGAAGAAGCT 544
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TTGGTTCTGATTCATGCGGCGGTTAGAAGAAGTGATAATTTGTTTCTTGATGAAGAAGCT 575
Query 545 GCGGCGGTTACTGAATCTTCAGGGCTGATGTCATACCCTTCGTCATAATTACCAAA--TT 602
||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||| ||
Sbjct 576 GCGGCGGTTACTGAAGCTTCAGGGCTGATGTCATACCCTTCGTCGTAAAT-CCAAAAATT 634
Query 603 TGTT 606
||||
Sbjct 635 TGTT 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5